==17755== Memcheck, a memory error detector ==17755== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17755== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17755== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartFileFinder -malloc_debug -malloc_dump -memory_info ==17755== Parent PID: 15025 ==17755== ==17755== ==17755== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17755== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17755== at 0x8567536: __open_nocancel (open64_nocancel.c:39) ==17755== by 0x84EBBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17755== by 0xF48189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF481A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF480C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF480F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF350159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0x88B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x989C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17755== by 0x80FA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17755== by 0x80FA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17755== by 0x401708C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17755== by 0x4011EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17755== by 0x40146C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17755== by 0x401455D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17755== by 0x4014C0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17755== by 0x40106B2: main (TestHeartFileFinder.cpp:18) ==17755== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17755== Open file descriptor 9: ==17755== at 0x857596B: eventfd (syscall-template.S:120) ==17755== by 0xF4E1188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4DF395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4DF704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4DF9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4460D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF4461E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF350120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0x88B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x989C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17755== by 0x80FA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17755== by 0x80FA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17755== by 0x401708C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17755== by 0x4011EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17755== by 0x40146C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17755== by 0x401455D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17755== by 0x4014C0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17755== by 0x40106B2: main (TestHeartFileFinder.cpp:18) ==17755== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17755== Open file descriptor 8: ==17755== at 0x85662BB: pipe2 (syscall-template.S:120) ==17755== by 0xF4E0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4E3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4E3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4DF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4460D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF4461E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF350120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0x88B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x989C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17755== by 0x80FA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17755== by 0x80FA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17755== by 0x401708C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17755== by 0x4011EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17755== by 0x40146C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17755== by 0x401455D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17755== by 0x4014C0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17755== by 0x40106B2: main (TestHeartFileFinder.cpp:18) ==17755== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17755== Open file descriptor 7: ==17755== at 0x85662BB: pipe2 (syscall-template.S:120) ==17755== by 0xF4E0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4E3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4E3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4DF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4460D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF4461E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF350120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0x88B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x989C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17755== by 0x80FA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17755== by 0x80FA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17755== by 0x401708C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17755== by 0x4011EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17755== by 0x40146C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17755== by 0x401455D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17755== by 0x4014C0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17755== by 0x40106B2: main (TestHeartFileFinder.cpp:18) ==17755== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17755== Open file descriptor 6: ==17755== at 0x857646B: epoll_create1 (syscall-template.S:120) ==17755== by 0xF4E36FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4DF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17755== by 0xF4460D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF4461E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0xF350120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17755== by 0x88B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x88EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17755== by 0x989C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17755== by 0x80FA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17755== by 0x80FA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17755== by 0x401708C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17755== by 0x4011EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17755== by 0x40146C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17755== by 0x401455D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17755== by 0x4014C0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17755== by 0x40106B2: main (TestHeartFileFinder.cpp:18) ==17755== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17755== ==17755== HEAP SUMMARY: ==17755== in use at exit: 126,430 bytes in 901 blocks ==17755== total heap usage: 29,040 allocs, 28,139 frees, 10,584,855 bytes allocated ==17755== ==17755== LEAK SUMMARY: ==17755== definitely lost: 0 bytes in 0 blocks ==17755== indirectly lost: 0 bytes in 0 blocks ==17755== possibly lost: 0 bytes in 0 blocks ==17755== still reachable: 11,957 bytes in 44 blocks ==17755== suppressed: 114,473 bytes in 857 blocks ==17755== Reachable blocks (those to which a pointer was found) are not shown. ==17755== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17755== ==17755== For lists of detected and suppressed errors, rerun with: -s ==17755== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)