==17021== Memcheck, a memory error detector ==17021== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17021== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17021== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info ==17021== Parent PID: 16132 ==17021== ==17021== ==17021== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17021== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17021== at 0x5014536: __open_nocancel (open64_nocancel.c:39) ==17021== by 0x4F98BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17021== by 0xFF2A89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFF2AA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFF29C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFF29F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFDF9159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xACF40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACFA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xAD2B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0x7A61446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17021== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17021== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17021== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17021== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17021== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17021== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17021== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17021== by 0x401B012: main (TestMaterialLaws.cpp:19) ==17021== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17021== Open file descriptor 9: ==17021== at 0x502296B: eventfd (syscall-template.S:120) ==17021== by 0xFF8A188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF88395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF88704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF889F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFEEF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFEEF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFDF9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xACF40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACFA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xAD2B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0x7A61446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17021== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17021== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17021== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17021== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17021== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17021== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17021== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17021== by 0x401B012: main (TestMaterialLaws.cpp:19) ==17021== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17021== Open file descriptor 8: ==17021== at 0x50132BB: pipe2 (syscall-template.S:120) ==17021== by 0xFF89F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF8C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF8C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF888AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFEEF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFEEF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFDF9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xACF40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACFA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xAD2B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0x7A61446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17021== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17021== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17021== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17021== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17021== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17021== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17021== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17021== by 0x401B012: main (TestMaterialLaws.cpp:19) ==17021== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17021== Open file descriptor 7: ==17021== at 0x50132BB: pipe2 (syscall-template.S:120) ==17021== by 0xFF89F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF8C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF8C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF888AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFEEF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFEEF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFDF9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xACF40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACFA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xAD2B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0x7A61446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17021== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17021== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17021== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17021== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17021== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17021== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17021== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17021== by 0x401B012: main (TestMaterialLaws.cpp:19) ==17021== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17021== Open file descriptor 6: ==17021== at 0x502346B: epoll_create1 (syscall-template.S:120) ==17021== by 0xFF8C6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFF888AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17021== by 0xFEEF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFEEF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xFDF9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17021== by 0xACF40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACFA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xACF118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0xAD2B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17021== by 0x7A61446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17021== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17021== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17021== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17021== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17021== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17021== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17021== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17021== by 0x401B012: main (TestMaterialLaws.cpp:19) ==17021== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17021== ==17021== HEAP SUMMARY: ==17021== in use at exit: 126,386 bytes in 901 blocks ==17021== total heap usage: 27,821 allocs, 26,920 frees, 10,419,200 bytes allocated ==17021== ==17021== LEAK SUMMARY: ==17021== definitely lost: 0 bytes in 0 blocks ==17021== indirectly lost: 0 bytes in 0 blocks ==17021== possibly lost: 0 bytes in 0 blocks ==17021== still reachable: 11,917 bytes in 44 blocks ==17021== suppressed: 114,469 bytes in 857 blocks ==17021== Reachable blocks (those to which a pointer was found) are not shown. ==17021== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17021== ==17021== For lists of detected and suppressed errors, rerun with: -s ==17021== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)