==16994== Memcheck, a memory error detector ==16994== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16994== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16994== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info ==16994== Parent PID: 16132 ==16994== ==16994== ==16994== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16994== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16994== at 0x903F536: __open_nocancel (open64_nocancel.c:39) ==16994== by 0x8FC3BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16994== by 0xD81389E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD813A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD812C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD812F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD6E2159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0x92BB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92B818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92F2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0xA2A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16994== by 0x694D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16994== by 0x694D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16994== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16994== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16994== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16994== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16994== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16994== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16994== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16994== Open file descriptor 9: ==16994== at 0x904D96B: eventfd (syscall-template.S:120) ==16994== by 0xD873188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD871395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD871704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD8719F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD7D80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD7D81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD6E2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0x92BB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92B818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92F2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0xA2A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16994== by 0x694D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16994== by 0x694D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16994== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16994== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16994== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16994== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16994== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16994== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16994== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16994== Open file descriptor 8: ==16994== at 0x903E2BB: pipe2 (syscall-template.S:120) ==16994== by 0xD872F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD875579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD875774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD8718AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD7D80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD7D81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD6E2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0x92BB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92B818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92F2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0xA2A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16994== by 0x694D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16994== by 0x694D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16994== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16994== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16994== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16994== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16994== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16994== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16994== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16994== Open file descriptor 7: ==16994== at 0x903E2BB: pipe2 (syscall-template.S:120) ==16994== by 0xD872F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD875579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD875774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD8718AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD7D80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD7D81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD6E2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0x92BB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92B818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92F2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0xA2A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16994== by 0x694D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16994== by 0x694D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16994== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16994== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16994== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16994== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16994== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16994== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16994== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16994== Open file descriptor 4: ==16994== at 0x904E46B: epoll_create1 (syscall-template.S:120) ==16994== by 0xD8756FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD8718AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16994== by 0xD7D80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD7D81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0xD6E2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16994== by 0x92BB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92C12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92B818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0x92F2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16994== by 0xA2A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16994== by 0x694D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16994== by 0x694D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16994== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16994== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16994== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16994== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16994== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16994== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16994== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16994== ==16994== HEAP SUMMARY: ==16994== in use at exit: 126,387 bytes in 901 blocks ==16994== total heap usage: 28,460 allocs, 27,559 frees, 10,858,100 bytes allocated ==16994== ==16994== LEAK SUMMARY: ==16994== definitely lost: 0 bytes in 0 blocks ==16994== indirectly lost: 0 bytes in 0 blocks ==16994== possibly lost: 0 bytes in 0 blocks ==16994== still reachable: 11,909 bytes in 44 blocks ==16994== suppressed: 114,478 bytes in 857 blocks ==16994== Reachable blocks (those to which a pointer was found) are not shown. ==16994== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16994== ==16994== For lists of detected and suppressed errors, rerun with: -s ==16994== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)