==14208== Memcheck, a memory error detector ==14208== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14208== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14208== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestShovingCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info ==14208== Parent PID: 14096 ==14208== ==14208== ==14208== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14208== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14208== at 0x13912536: __open_nocancel (open64_nocancel.c:39) ==14208== by 0x13896BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14208== by 0x18E0389E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18E03A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18E02C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18E02F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18CD2159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x131AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x6A9A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14208== by 0x130E32D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14208== by 0x130E3327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14208== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14208== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14208== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14208== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14208== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14208== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14208== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14208== Open file descriptor 9: ==14208== at 0x1392096B: eventfd (syscall-template.S:120) ==14208== by 0x18E63188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E61395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E61704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E619F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18DC80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18DC81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18CD2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x131AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x6A9A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14208== by 0x130E32D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14208== by 0x130E3327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14208== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14208== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14208== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14208== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14208== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14208== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14208== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14208== Open file descriptor 8: ==14208== at 0x139112BB: pipe2 (syscall-template.S:120) ==14208== by 0x18E62F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E65579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E65774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E618AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18DC80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18DC81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18CD2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x131AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x6A9A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14208== by 0x130E32D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14208== by 0x130E3327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14208== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14208== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14208== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14208== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14208== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14208== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14208== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14208== Open file descriptor 7: ==14208== at 0x139112BB: pipe2 (syscall-template.S:120) ==14208== by 0x18E62F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E65579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E65774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E618AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18DC80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18DC81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18CD2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x131AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x6A9A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14208== by 0x130E32D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14208== by 0x130E3327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14208== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14208== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14208== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14208== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14208== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14208== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14208== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14208== Open file descriptor 6: ==14208== at 0x1392146B: epoll_create1 (syscall-template.S:120) ==14208== by 0x18E656FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18E618AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14208== by 0x18DC80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18DC81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x18CD2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14208== by 0x131AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x131E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14208== by 0x6A9A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14208== by 0x130E32D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14208== by 0x130E3327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14208== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14208== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14208== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14208== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14208== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14208== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14208== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14208== ==14208== HEAP SUMMARY: ==14208== in use at exit: 126,490 bytes in 903 blocks ==14208== total heap usage: 38,255 allocs, 37,352 frees, 11,237,287 bytes allocated ==14208== ==14208== LEAK SUMMARY: ==14208== definitely lost: 0 bytes in 0 blocks ==14208== indirectly lost: 0 bytes in 0 blocks ==14208== possibly lost: 0 bytes in 0 blocks ==14208== still reachable: 12,005 bytes in 46 blocks ==14208== suppressed: 114,485 bytes in 857 blocks ==14208== Reachable blocks (those to which a pointer was found) are not shown. ==14208== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14208== ==14208== For lists of detected and suppressed errors, rerun with: -s ==14208== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)