==14158== Memcheck, a memory error detector
==14158== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14158== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14158== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info
==14158== Parent PID: 14096
==14158== 
==14158== 
==14158== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14158== Open file descriptor 10: /dev/shm/open_mpi.0000
==14158==    at 0x15816536: __open_nocancel (open64_nocancel.c:39)
==14158==    by 0x1579ABC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14158==    by 0x1AD0E89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1AD0EA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1AD0DC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1AD0DF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1ABDD159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x150AF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150AC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150E6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14158==    by 0x14FE72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14158==    by 0x14FE7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14158==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14158==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14158==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14158==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14158==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14158==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==14158== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14158== Open file descriptor 9:
==14158==    at 0x1582496B: eventfd (syscall-template.S:120)
==14158==    by 0x1AD6E188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD6C395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD6C704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD6C9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1ACD30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1ACD31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1ABDD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x150AF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150AC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150E6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14158==    by 0x14FE72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14158==    by 0x14FE7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14158==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14158==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14158==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14158==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14158==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14158==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==14158== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14158== Open file descriptor 8:
==14158==    at 0x158152BB: pipe2 (syscall-template.S:120)
==14158==    by 0x1AD6DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD70579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD70774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD6C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1ACD30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1ACD31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1ABDD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x150AF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150AC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150E6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14158==    by 0x14FE72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14158==    by 0x14FE7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14158==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14158==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14158==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14158==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14158==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14158==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==14158== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14158== Open file descriptor 7:
==14158==    at 0x158152BB: pipe2 (syscall-template.S:120)
==14158==    by 0x1AD6DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD70579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD70774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD6C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1ACD30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1ACD31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1ABDD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x150AF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150AC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150E6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14158==    by 0x14FE72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14158==    by 0x14FE7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14158==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14158==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14158==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14158==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14158==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14158==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==14158== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14158== Open file descriptor 6:
==14158==    at 0x1582546B: epoll_create1 (syscall-template.S:120)
==14158==    by 0x1AD706FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1AD6C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14158==    by 0x1ACD30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1ACD31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x1ABDD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14158==    by 0x150AF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150B52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150AC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x150E6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14158==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14158==    by 0x14FE72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14158==    by 0x14FE7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14158==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14158==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14158==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14158==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14158==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14158==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==14158== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14158== 
==14158== HEAP SUMMARY:
==14158==     in use at exit: 126,454 bytes in 901 blocks
==14158==   total heap usage: 501,129 allocs, 500,228 frees, 219,260,398 bytes allocated
==14158== 
==14158== LEAK SUMMARY:
==14158==    definitely lost: 0 bytes in 0 blocks
==14158==    indirectly lost: 0 bytes in 0 blocks
==14158==      possibly lost: 0 bytes in 0 blocks
==14158==    still reachable: 11,957 bytes in 44 blocks
==14158==         suppressed: 114,497 bytes in 857 blocks
==14158== Reachable blocks (those to which a pointer was found) are not shown.
==14158== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14158== 
==14158== For lists of detected and suppressed errors, rerun with: -s
==14158== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 34 from 34)