==17441== Memcheck, a memory error detector ==17441== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17441== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17441== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestVoltageInterpolaterOntoMechanicsMesh -malloc_debug -malloc_dump -memory_info ==17441== Parent PID: 15025 ==17441== ==17441== ==17441== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17441== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17441== at 0xDD1F536: __open_nocancel (open64_nocancel.c:39) ==17441== by 0xDCA3BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17441== by 0x1398189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x13981A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x13980C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x13980F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x13850159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0xE06B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE07049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0712C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE06818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0A2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17441== by 0xD8D52D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17441== by 0xD8D5327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17441== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17441== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17441== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17441== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17441== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17441== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==17441== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17441== Open file descriptor 9: ==17441== at 0xDD2D96B: eventfd (syscall-template.S:120) ==17441== by 0x139E1188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139DF395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139DF704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139DF9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139460D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x139461E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x13850120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0xE06B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE07049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0712C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE06818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0A2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17441== by 0xD8D52D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17441== by 0xD8D5327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17441== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17441== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17441== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17441== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17441== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17441== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==17441== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17441== Open file descriptor 8: ==17441== at 0xDD1E2BB: pipe2 (syscall-template.S:120) ==17441== by 0x139E0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139E3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139E3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139DF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139460D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x139461E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x13850120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0xE06B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE07049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0712C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE06818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0A2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17441== by 0xD8D52D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17441== by 0xD8D5327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17441== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17441== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17441== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17441== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17441== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17441== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==17441== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17441== Open file descriptor 7: ==17441== at 0xDD1E2BB: pipe2 (syscall-template.S:120) ==17441== by 0x139E0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139E3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139E3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139DF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139460D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x139461E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x13850120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0xE06B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE07049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0712C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE06818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0A2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17441== by 0xD8D52D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17441== by 0xD8D5327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17441== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17441== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17441== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17441== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17441== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17441== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==17441== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17441== Open file descriptor 6: ==17441== at 0xDD2E46B: epoll_create1 (syscall-template.S:120) ==17441== by 0x139E36FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139DF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17441== by 0x139460D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x139461E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0x13850120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17441== by 0xE06B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE07049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0712C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE06818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0xE0A2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17441== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17441== by 0xD8D52D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17441== by 0xD8D5327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17441== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17441== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17441== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17441== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17441== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17441== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==17441== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17441== ==17441== HEAP SUMMARY: ==17441== in use at exit: 126,883 bytes in 910 blocks ==17441== total heap usage: 601,907 allocs, 600,997 frees, 205,759,610 bytes allocated ==17441== ==17441== LEAK SUMMARY: ==17441== definitely lost: 0 bytes in 0 blocks ==17441== indirectly lost: 0 bytes in 0 blocks ==17441== possibly lost: 0 bytes in 0 blocks ==17441== still reachable: 11,957 bytes in 44 blocks ==17441== suppressed: 114,926 bytes in 866 blocks ==17441== Reachable blocks (those to which a pointer was found) are not shown. ==17441== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17441== ==17441== For lists of detected and suppressed errors, rerun with: -s ==17441== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 42 from 34)