==16466== Memcheck, a memory error detector ==16466== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16466== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16466== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info ==16466== Parent PID: 15657 ==16466== ==16466== ==16466== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16466== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16466== at 0x5014536: __open_nocancel (open64_nocancel.c:39) ==16466== by 0x4F98BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16466== by 0xFE3F89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFE3FA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFE3EC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFE3EF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFD0E159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16466== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16466== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16466== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16466== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16466== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16466== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16466== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16466== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16466== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16466== Open file descriptor 9: ==16466== at 0x502296B: eventfd (syscall-template.S:120) ==16466== by 0xFE9F188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE9D395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE9D704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE9D9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFE041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFD0E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16466== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16466== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16466== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16466== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16466== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16466== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16466== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16466== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16466== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16466== Open file descriptor 8: ==16466== at 0x50132BB: pipe2 (syscall-template.S:120) ==16466== by 0xFE9EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFEA1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFEA1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE9D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFE041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFD0E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16466== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16466== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16466== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16466== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16466== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16466== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16466== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16466== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16466== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16466== Open file descriptor 7: ==16466== at 0x50132BB: pipe2 (syscall-template.S:120) ==16466== by 0xFE9EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFEA1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFEA1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE9D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFE041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFD0E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16466== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16466== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16466== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16466== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16466== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16466== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16466== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16466== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16466== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16466== Open file descriptor 5: ==16466== at 0x502346B: epoll_create1 (syscall-template.S:120) ==16466== by 0xFEA16FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE9D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16466== by 0xFE040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFE041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xFD0E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16466== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16466== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16466== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16466== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16466== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16466== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16466== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16466== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16466== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16466== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16466== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16466== ==16466== HEAP SUMMARY: ==16466== in use at exit: 104,506 bytes in 634 blocks ==16466== total heap usage: 27,151 allocs, 26,517 frees, 8,430,464 bytes allocated ==16466== ==16466== LEAK SUMMARY: ==16466== definitely lost: 0 bytes in 0 blocks ==16466== indirectly lost: 0 bytes in 0 blocks ==16466== possibly lost: 0 bytes in 0 blocks ==16466== still reachable: 11,917 bytes in 44 blocks ==16466== suppressed: 92,589 bytes in 590 blocks ==16466== Reachable blocks (those to which a pointer was found) are not shown. ==16466== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16466== ==16466== For lists of detected and suppressed errors, rerun with: -s ==16466== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)