==18057== Memcheck, a memory error detector
==18057== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==18057== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==18057== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulation -malloc_debug -malloc_dump -memory_info
==18057== Parent PID: 15005
==18057== 
==18057== 
==18057== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==18057== Open file descriptor 10: /dev/shm/open_mpi.0000
==18057==    at 0xA885536: __open_nocancel (open64_nocancel.c:39)
==18057==    by 0xA809BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==18057==    by 0xF86489E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF864A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF863C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF863F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF733159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xABCF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABCC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xAC06627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xBBBA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==18057==    by 0xA43B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==18057==    by 0xA43B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==18057==    by 0x4017D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==18057==    by 0x4011AA1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==18057==    by 0x401590E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==18057==    by 0x4015732: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==18057==    by 0x4015EDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==18057==    by 0x400FAD8: main (TestCardiacSimulation.cpp:19)
==18057== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==18057== Open file descriptor 9:
==18057==    at 0xA89396B: eventfd (syscall-template.S:120)
==18057==    by 0xF8C6188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C4395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C4704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C49F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8290D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF8291E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF733120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xABCF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABCC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xAC06627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xBBBA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==18057==    by 0xA43B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==18057==    by 0xA43B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==18057==    by 0x4017D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==18057==    by 0x4011AA1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==18057==    by 0x401590E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==18057==    by 0x4015732: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==18057==    by 0x4015EDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==18057==    by 0x400FAD8: main (TestCardiacSimulation.cpp:19)
==18057== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==18057== Open file descriptor 8:
==18057==    at 0xA8842BB: pipe2 (syscall-template.S:120)
==18057==    by 0xF8C5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8290D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF8291E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF733120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xABCF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABCC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xAC06627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xBBBA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==18057==    by 0xA43B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==18057==    by 0xA43B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==18057==    by 0x4017D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==18057==    by 0x4011AA1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==18057==    by 0x401590E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==18057==    by 0x4015732: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==18057==    by 0x4015EDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==18057==    by 0x400FAD8: main (TestCardiacSimulation.cpp:19)
==18057== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==18057== Open file descriptor 7:
==18057==    at 0xA8842BB: pipe2 (syscall-template.S:120)
==18057==    by 0xF8C5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8290D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF8291E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF733120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xABCF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABCC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xAC06627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xBBBA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==18057==    by 0xA43B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==18057==    by 0xA43B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==18057==    by 0x4017D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==18057==    by 0x4011AA1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==18057==    by 0x401590E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==18057==    by 0x4015732: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==18057==    by 0x4015EDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==18057==    by 0x400FAD8: main (TestCardiacSimulation.cpp:19)
==18057== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==18057== Open file descriptor 6:
==18057==    at 0xA89446B: epoll_create1 (syscall-template.S:120)
==18057==    by 0xF8C86FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8C48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==18057==    by 0xF8290D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF8291E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xF733120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==18057==    by 0xABCF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABD52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xABCC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xAC06627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==18057==    by 0xBBBA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==18057==    by 0xA43B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==18057==    by 0xA43B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==18057==    by 0x4017D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==18057==    by 0x4011AA1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==18057==    by 0x401590E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==18057==    by 0x4015732: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==18057==    by 0x4015EDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==18057==    by 0x400FAD8: main (TestCardiacSimulation.cpp:19)
==18057== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==18057== 
==18057== HEAP SUMMARY:
==18057==     in use at exit: 134,332 bytes in 922 blocks
==18057==   total heap usage: 4,743,165 allocs, 4,742,243 frees, 1,510,197,093 bytes allocated
==18057== 
==18057== LEAK SUMMARY:
==18057==    definitely lost: 0 bytes in 0 blocks
==18057==    indirectly lost: 0 bytes in 0 blocks
==18057==      possibly lost: 0 bytes in 0 blocks
==18057==    still reachable: 19,497 bytes in 60 blocks
==18057==         suppressed: 114,835 bytes in 862 blocks
==18057== Reachable blocks (those to which a pointer was found) are not shown.
==18057== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==18057== 
==18057== For lists of detected and suppressed errors, rerun with: -s
==18057== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 231 from 34)