==14037== Memcheck, a memory error detector
==14037== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14037== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14037== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptCellsGenerator -malloc_debug -malloc_dump -memory_info
==14037== Parent PID: 14035
==14037== 
==14037== 
==14037== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14037== Open file descriptor 10: /dev/shm/open_mpi.0000
==14037==    at 0x15550536: __open_nocancel (open64_nocancel.c:39)
==14037==    by 0x154D4BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14037==    by 0x1AC5889E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AC58A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AC57C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AC57F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AB27159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x14DEB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DE818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14E22627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x6A20446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14037==    by 0x14D212D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14037==    by 0x14D21327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14037==    by 0x4018D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14037==    by 0x4013881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14037==    by 0x40163AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14037==    by 0x4016241: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14037==    by 0x401693B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14037==    by 0x4011CD8: main (TestCryptCellsGenerator.cpp:18)
==14037== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14037== Open file descriptor 9:
==14037==    at 0x1555E96B: eventfd (syscall-template.S:120)
==14037==    by 0x1ACB8188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACB6395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACB6704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACB69F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1AC1D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AC1D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AB27120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x14DEB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DE818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14E22627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x6A20446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14037==    by 0x14D212D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14037==    by 0x14D21327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14037==    by 0x4018D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14037==    by 0x4013881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14037==    by 0x40163AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14037==    by 0x4016241: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14037==    by 0x401693B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14037==    by 0x4011CD8: main (TestCryptCellsGenerator.cpp:18)
==14037== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14037== Open file descriptor 8:
==14037==    at 0x1554F2BB: pipe2 (syscall-template.S:120)
==14037==    by 0x1ACB7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACBA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACBA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACB68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1AC1D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AC1D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AB27120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x14DEB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DE818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14E22627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x6A20446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14037==    by 0x14D212D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14037==    by 0x14D21327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14037==    by 0x4018D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14037==    by 0x4013881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14037==    by 0x40163AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14037==    by 0x4016241: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14037==    by 0x401693B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14037==    by 0x4011CD8: main (TestCryptCellsGenerator.cpp:18)
==14037== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14037== Open file descriptor 7:
==14037==    at 0x1554F2BB: pipe2 (syscall-template.S:120)
==14037==    by 0x1ACB7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACBA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACBA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACB68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1AC1D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AC1D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AB27120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x14DEB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DE818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14E22627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x6A20446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14037==    by 0x14D212D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14037==    by 0x14D21327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14037==    by 0x4018D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14037==    by 0x4013881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14037==    by 0x40163AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14037==    by 0x4016241: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14037==    by 0x401693B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14037==    by 0x4011CD8: main (TestCryptCellsGenerator.cpp:18)
==14037== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14037== Open file descriptor 6:
==14037==    at 0x1555F46B: epoll_create1 (syscall-template.S:120)
==14037==    by 0x1ACBA6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1ACB68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14037==    by 0x1AC1D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AC1D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x1AB27120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14037==    by 0x14DEB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DF12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14DE818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x14E22627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14037==    by 0x6A20446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14037==    by 0x14D212D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14037==    by 0x14D21327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14037==    by 0x4018D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14037==    by 0x4013881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14037==    by 0x40163AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14037==    by 0x4016241: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14037==    by 0x401693B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14037==    by 0x4011CD8: main (TestCryptCellsGenerator.cpp:18)
==14037== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14037== 
==14037== HEAP SUMMARY:
==14037==     in use at exit: 126,594 bytes in 903 blocks
==14037==   total heap usage: 67,707 allocs, 66,804 frees, 14,302,011 bytes allocated
==14037== 
==14037== LEAK SUMMARY:
==14037==    definitely lost: 0 bytes in 0 blocks
==14037==    indirectly lost: 0 bytes in 0 blocks
==14037==      possibly lost: 0 bytes in 0 blocks
==14037==    still reachable: 12,117 bytes in 46 blocks
==14037==         suppressed: 114,477 bytes in 857 blocks
==14037== Reachable blocks (those to which a pointer was found) are not shown.
==14037== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14037== 
==14037== For lists of detected and suppressed errors, rerun with: -s
==14037== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 34 from 34)