==14513== Memcheck, a memory error detector ==14513== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14513== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14513== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionStatistics -malloc_debug -malloc_dump -memory_info ==14513== Parent PID: 14035 ==14513== ==14513== ==14513== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14513== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14513== at 0x15630536: __open_nocancel (open64_nocancel.c:39) ==14513== by 0x155B4BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14513== by 0x1AC5689E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AC56A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AC55C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AC55F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AB25159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x14DE90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DE618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14E20627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14513== by 0x14D1F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14513== by 0x14D1F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14513== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14513== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14513== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14513== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14513== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14513== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==14513== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14513== Open file descriptor 9: ==14513== at 0x1563E96B: eventfd (syscall-template.S:120) ==14513== by 0x1ACB6188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB4395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB4704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB49F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1AC1B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AC1B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AB25120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x14DE90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DE618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14E20627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14513== by 0x14D1F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14513== by 0x14D1F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14513== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14513== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14513== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14513== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14513== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14513== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==14513== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14513== Open file descriptor 8: ==14513== at 0x1562F2BB: pipe2 (syscall-template.S:120) ==14513== by 0x1ACB5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1AC1B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AC1B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AB25120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x14DE90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DE618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14E20627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14513== by 0x14D1F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14513== by 0x14D1F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14513== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14513== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14513== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14513== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14513== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14513== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==14513== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14513== Open file descriptor 7: ==14513== at 0x1562F2BB: pipe2 (syscall-template.S:120) ==14513== by 0x1ACB5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1AC1B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AC1B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AB25120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x14DE90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DE618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14E20627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14513== by 0x14D1F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14513== by 0x14D1F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14513== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14513== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14513== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14513== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14513== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14513== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==14513== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14513== Open file descriptor 6: ==14513== at 0x1563F46B: epoll_create1 (syscall-template.S:120) ==14513== by 0x1ACB86FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1ACB48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14513== by 0x1AC1B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AC1B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x1AB25120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14513== by 0x14DE90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DEF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14DE618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x14E20627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14513== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14513== by 0x14D1F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14513== by 0x14D1F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14513== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14513== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14513== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14513== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14513== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14513== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==14513== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14513== ==14513== HEAP SUMMARY: ==14513== in use at exit: 126,472 bytes in 902 blocks ==14513== total heap usage: 1,136,107 allocs, 1,135,205 frees, 76,581,787 bytes allocated ==14513== ==14513== LEAK SUMMARY: ==14513== definitely lost: 0 bytes in 0 blocks ==14513== indirectly lost: 0 bytes in 0 blocks ==14513== possibly lost: 0 bytes in 0 blocks ==14513== still reachable: 11,989 bytes in 45 blocks ==14513== suppressed: 114,483 bytes in 857 blocks ==14513== Reachable blocks (those to which a pointer was found) are not shown. ==14513== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14513== ==14513== For lists of detected and suppressed errors, rerun with: -s ==14513== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)