==14563== Memcheck, a memory error detector ==14563== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14563== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14563== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==14563== Parent PID: 14035 ==14563== ==14563== ==14563== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14563== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14563== at 0x157D8536: __open_nocancel (open64_nocancel.c:39) ==14563== by 0x1575CBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14563== by 0x1AD4A89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AD4AA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AD49C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AD49F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AC19159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x14F8F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F9449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F952C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F8C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14FC6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14563== by 0x14EC72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14563== by 0x14EC7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14563== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14563== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14563== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14563== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14563== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14563== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14563== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14563== Open file descriptor 9: ==14563== at 0x157E696B: eventfd (syscall-template.S:120) ==14563== by 0x1ADAA188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADA8395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADA8704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADA89F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1AD0F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AD0F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AC19120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x14F8F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F9449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F952C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F8C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14FC6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14563== by 0x14EC72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14563== by 0x14EC7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14563== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14563== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14563== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14563== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14563== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14563== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14563== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14563== Open file descriptor 8: ==14563== at 0x157D72BB: pipe2 (syscall-template.S:120) ==14563== by 0x1ADA9F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADAC579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADAC774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADA88AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1AD0F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AD0F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AC19120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x14F8F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F9449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F952C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F8C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14FC6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14563== by 0x14EC72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14563== by 0x14EC7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14563== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14563== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14563== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14563== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14563== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14563== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14563== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14563== Open file descriptor 7: ==14563== at 0x157D72BB: pipe2 (syscall-template.S:120) ==14563== by 0x1ADA9F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADAC579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADAC774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADA88AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1AD0F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AD0F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AC19120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x14F8F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F9449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F952C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F8C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14FC6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14563== by 0x14EC72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14563== by 0x14EC7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14563== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14563== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14563== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14563== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14563== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14563== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14563== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14563== Open file descriptor 6: ==14563== at 0x157E746B: epoll_create1 (syscall-template.S:120) ==14563== by 0x1ADAC6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1ADA88AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14563== by 0x1AD0F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AD0F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x1AC19120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14563== by 0x14F8F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F9449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F952C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14F8C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x14FC6627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14563== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14563== by 0x14EC72D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14563== by 0x14EC7327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14563== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14563== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14563== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14563== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14563== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14563== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14563== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14563== ==14563== HEAP SUMMARY: ==14563== in use at exit: 126,430 bytes in 901 blocks ==14563== total heap usage: 1,800,055 allocs, 1,799,154 frees, 118,265,503 bytes allocated ==14563== ==14563== LEAK SUMMARY: ==14563== definitely lost: 0 bytes in 0 blocks ==14563== indirectly lost: 0 bytes in 0 blocks ==14563== possibly lost: 0 bytes in 0 blocks ==14563== still reachable: 11,957 bytes in 44 blocks ==14563== suppressed: 114,473 bytes in 857 blocks ==14563== Reachable blocks (those to which a pointer was found) are not shown. ==14563== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14563== ==14563== For lists of detected and suppressed errors, rerun with: -s ==14563== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)