==16562== Memcheck, a memory error detector
==16562== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16562== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16562== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshRosetteMethods -malloc_debug -malloc_dump -memory_info
==16562== Parent PID: 16053
==16562== 
==16562== 
==16562== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16562== Open file descriptor 10: /dev/shm/open_mpi.0000
==16562==    at 0xAA0F536: __open_nocancel (open64_nocancel.c:39)
==16562==    by 0xA993BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16562==    by 0xF90F89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF90FA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF90EC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF90EF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF7DE159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0x7F340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F6B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x6F35446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16562==    by 0x65DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16562==    by 0x65DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16562==    by 0x4019813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16562==    by 0x4013ED1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16562==    by 0x401712E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16562==    by 0x4016F52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16562==    by 0x40176FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16562==    by 0x4011F08: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==16562== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16562== Open file descriptor 9:
==16562==    at 0xAA1D96B: eventfd (syscall-template.S:120)
==16562==    by 0xF96F188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF96D395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF96D704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF96D9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF8D40D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF8D41E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF7DE120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0x7F340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F6B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x6F35446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16562==    by 0x65DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16562==    by 0x65DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16562==    by 0x4019813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16562==    by 0x4013ED1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16562==    by 0x401712E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16562==    by 0x4016F52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16562==    by 0x40176FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16562==    by 0x4011F08: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==16562== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16562== Open file descriptor 8:
==16562==    at 0xAA0E2BB: pipe2 (syscall-template.S:120)
==16562==    by 0xF96EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF971579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF971774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF96D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF8D40D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF8D41E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF7DE120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0x7F340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F6B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x6F35446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16562==    by 0x65DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16562==    by 0x65DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16562==    by 0x4019813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16562==    by 0x4013ED1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16562==    by 0x401712E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16562==    by 0x4016F52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16562==    by 0x40176FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16562==    by 0x4011F08: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==16562== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16562== Open file descriptor 7:
==16562==    at 0xAA0E2BB: pipe2 (syscall-template.S:120)
==16562==    by 0xF96EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF971579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF971774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF96D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF8D40D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF8D41E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF7DE120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0x7F340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F6B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x6F35446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16562==    by 0x65DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16562==    by 0x65DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16562==    by 0x4019813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16562==    by 0x4013ED1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16562==    by 0x401712E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16562==    by 0x4016F52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16562==    by 0x40176FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16562==    by 0x4011F08: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==16562== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16562== Open file descriptor 6:
==16562==    at 0xAA1E46B: epoll_create1 (syscall-template.S:120)
==16562==    by 0xF9716FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF96D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16562==    by 0xF8D40D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF8D41E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0xF7DE120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16562==    by 0x7F340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F3118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x7F6B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16562==    by 0x6F35446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16562==    by 0x65DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16562==    by 0x65DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16562==    by 0x4019813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16562==    by 0x4013ED1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16562==    by 0x401712E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16562==    by 0x4016F52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16562==    by 0x40176FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16562==    by 0x4011F08: main (TestMutableVertexMeshRosetteMethods.cpp:19)
==16562== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16562== 
==16562== HEAP SUMMARY:
==16562==     in use at exit: 128,934 bytes in 902 blocks
==16562==   total heap usage: 33,415 allocs, 32,513 frees, 10,824,918 bytes allocated
==16562== 
==16562== LEAK SUMMARY:
==16562==    definitely lost: 0 bytes in 0 blocks
==16562==    indirectly lost: 0 bytes in 0 blocks
==16562==      possibly lost: 0 bytes in 0 blocks
==16562==    still reachable: 14,445 bytes in 45 blocks
==16562==         suppressed: 114,489 bytes in 857 blocks
==16562== Reachable blocks (those to which a pointer was found) are not shown.
==16562== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16562== 
==16562== For lists of detected and suppressed errors, rerun with: -s
==16562== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)