==14061== Memcheck, a memory error detector
==14061== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14061== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14061== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info
==14061== Parent PID: 14035
==14061== 
==14061== 
==14061== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14061== Open file descriptor 10: /dev/shm/open_mpi.0000
==14061==    at 0x139A8536: __open_nocancel (open64_nocancel.c:39)
==14061==    by 0x1392CBC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14061==    by 0x18E9889E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18E98A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18E97C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18E97F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18D67159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x132430E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x132492C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1327A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x6B30446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14061==    by 0x131792D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14061==    by 0x13179327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14061==    by 0x4082913: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14061==    by 0x407A181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14061==    by 0x407DACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14061==    by 0x407D961: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14061==    by 0x407E05B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14061==    by 0x40779D8: main (TestSingleOdeWntCellCycleModel.cpp:18)
==14061== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14061== Open file descriptor 9:
==14061==    at 0x139B696B: eventfd (syscall-template.S:120)
==14061==    by 0x18EF8188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EF6395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EF6704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EF69F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18E5D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18E5D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18D67120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x132430E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x132492C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1327A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x6B30446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14061==    by 0x131792D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14061==    by 0x13179327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14061==    by 0x4082913: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14061==    by 0x407A181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14061==    by 0x407DACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14061==    by 0x407D961: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14061==    by 0x407E05B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14061==    by 0x40779D8: main (TestSingleOdeWntCellCycleModel.cpp:18)
==14061== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14061== Open file descriptor 8:
==14061==    at 0x139A72BB: pipe2 (syscall-template.S:120)
==14061==    by 0x18EF7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EFA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EFA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EF68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18E5D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18E5D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18D67120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x132430E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x132492C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1327A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x6B30446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14061==    by 0x131792D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14061==    by 0x13179327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14061==    by 0x4082913: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14061==    by 0x407A181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14061==    by 0x407DACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14061==    by 0x407D961: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14061==    by 0x407E05B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14061==    by 0x40779D8: main (TestSingleOdeWntCellCycleModel.cpp:18)
==14061== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14061== Open file descriptor 7:
==14061==    at 0x139A72BB: pipe2 (syscall-template.S:120)
==14061==    by 0x18EF7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EFA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EFA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EF68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18E5D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18E5D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18D67120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x132430E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x132492C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1327A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x6B30446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14061==    by 0x131792D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14061==    by 0x13179327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14061==    by 0x4082913: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14061==    by 0x407A181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14061==    by 0x407DACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14061==    by 0x407D961: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14061==    by 0x407E05B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14061==    by 0x40779D8: main (TestSingleOdeWntCellCycleModel.cpp:18)
==14061== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14061== Open file descriptor 4:
==14061==    at 0x139B746B: epoll_create1 (syscall-template.S:120)
==14061==    by 0x18EFA6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EF68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18E5D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18E5D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x18D67120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14061==    by 0x132430E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x132492C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1324018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x1327A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14061==    by 0x6B30446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14061==    by 0x131792D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14061==    by 0x13179327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14061==    by 0x4082913: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14061==    by 0x407A181: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14061==    by 0x407DACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14061==    by 0x407D961: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14061==    by 0x407E05B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14061==    by 0x40779D8: main (TestSingleOdeWntCellCycleModel.cpp:18)
==14061== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14061== 
==14061== HEAP SUMMARY:
==14061==     in use at exit: 126,617 bytes in 904 blocks
==14061==   total heap usage: 243,563 allocs, 242,659 frees, 29,967,360 bytes allocated
==14061== 
==14061== 32 bytes in 1 blocks are possibly lost in loss record 163 of 411
==14061==    at 0x4928888: malloc (vg_replace_malloc.c:447)
==14061==    by 0x1907D18A: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.9)
==14061==    by 0x19085273: pmix_hash_fetch (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.9)
==14061==    by 0x1910E1DC: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.9)
==14061==    by 0x18FD429E: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.9)
==14061==    by 0x18EF3467: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x18EF519E: event_base_loop (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14061==    by 0x19039F20: ??? (in /usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.9)
==14061==    by 0x139230EA: start_thread (pthread_create.c:454)
==14061==    by 0x139B6483: clone (clone.S:100)
==14061== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: possible
   fun:malloc
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.9
   fun:pmix_hash_fetch
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.9
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.9
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_loop
   obj:/usr/lib/x86_64-linux-gnu/pmix2/lib/libpmix.so.2.13.9
   fun:start_thread
   fun:clone
}
==14061== LEAK SUMMARY:
==14061==    definitely lost: 0 bytes in 0 blocks
==14061==    indirectly lost: 0 bytes in 0 blocks
==14061==      possibly lost: 32 bytes in 1 blocks
==14061==    still reachable: 12,133 bytes in 47 blocks
==14061==         suppressed: 114,452 bytes in 856 blocks
==14061== Reachable blocks (those to which a pointer was found) are not shown.
==14061== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14061== 
==14061== For lists of detected and suppressed errors, rerun with: -s
==14061== ERROR SUMMARY: 6 errors from 6 contexts (suppressed: 33 from 33)