==16899== Memcheck, a memory error detector
==16899== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16899== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16899== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTutorial -malloc_debug -malloc_dump -memory_info
==16899== Parent PID: 16053
==16899== 
==16899== 
==16899== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16899== Open file descriptor 10: /dev/shm/open_mpi.0000
==16899==    at 0xAA95536: __open_nocancel (open64_nocancel.c:39)
==16899==    by 0xAA19BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16899==    by 0xFDE789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFDE7A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFDE6C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFDE6F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFCB6159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xAC1C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC2149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC222C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC1918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC53627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0x738A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16899==    by 0x6A9D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16899==    by 0x6A9D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16899==    by 0x403FE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16899==    by 0x403A2E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16899==    by 0x403D6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16899==    by 0x403D551: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16899==    by 0x403DC4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16899==    by 0x4038738: main (TestWritingPdeSolversTutorial.cpp:18)
==16899== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16899== Open file descriptor 9:
==16899==    at 0xAAA396B: eventfd (syscall-template.S:120)
==16899==    by 0xFE47188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE45395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE45704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE459F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFDAC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFDAC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFCB6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xAC1C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC2149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC222C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC1918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC53627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0x738A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16899==    by 0x6A9D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16899==    by 0x6A9D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16899==    by 0x403FE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16899==    by 0x403A2E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16899==    by 0x403D6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16899==    by 0x403D551: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16899==    by 0x403DC4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16899==    by 0x4038738: main (TestWritingPdeSolversTutorial.cpp:18)
==16899== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16899== Open file descriptor 8:
==16899==    at 0xAA942BB: pipe2 (syscall-template.S:120)
==16899==    by 0xFE46F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE49579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE49774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE458AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFDAC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFDAC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFCB6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xAC1C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC2149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC222C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC1918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC53627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0x738A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16899==    by 0x6A9D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16899==    by 0x6A9D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16899==    by 0x403FE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16899==    by 0x403A2E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16899==    by 0x403D6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16899==    by 0x403D551: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16899==    by 0x403DC4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16899==    by 0x4038738: main (TestWritingPdeSolversTutorial.cpp:18)
==16899== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16899== Open file descriptor 7:
==16899==    at 0xAA942BB: pipe2 (syscall-template.S:120)
==16899==    by 0xFE46F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE49579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE49774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE458AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFDAC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFDAC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFCB6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xAC1C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC2149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC222C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC1918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC53627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0x738A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16899==    by 0x6A9D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16899==    by 0x6A9D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16899==    by 0x403FE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16899==    by 0x403A2E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16899==    by 0x403D6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16899==    by 0x403D551: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16899==    by 0x403DC4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16899==    by 0x4038738: main (TestWritingPdeSolversTutorial.cpp:18)
==16899== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16899== Open file descriptor 6:
==16899==    at 0xAAA446B: epoll_create1 (syscall-template.S:120)
==16899==    by 0xFE496FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFE458AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16899==    by 0xFDAC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFDAC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xFCB6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16899==    by 0xAC1C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC2149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC222C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC1918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0xAC53627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16899==    by 0x738A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16899==    by 0x6A9D2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16899==    by 0x6A9D327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16899==    by 0x403FE14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16899==    by 0x403A2E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16899==    by 0x403D6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16899==    by 0x403D551: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16899==    by 0x403DC4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16899==    by 0x4038738: main (TestWritingPdeSolversTutorial.cpp:18)
==16899== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16899== 
==16899== HEAP SUMMARY:
==16899==     in use at exit: 126,751 bytes in 906 blocks
==16899==   total heap usage: 1,110,302 allocs, 1,109,396 frees, 130,447,127 bytes allocated
==16899== 
==16899== LEAK SUMMARY:
==16899==    definitely lost: 0 bytes in 0 blocks
==16899==    indirectly lost: 0 bytes in 0 blocks
==16899==      possibly lost: 0 bytes in 0 blocks
==16899==    still reachable: 11,909 bytes in 44 blocks
==16899==         suppressed: 114,842 bytes in 862 blocks
==16899== Reachable blocks (those to which a pointer was found) are not shown.
==16899== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16899== 
==16899== For lists of detected and suppressed errors, rerun with: -s
==16899== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 36 from 34)