==16992== Memcheck, a memory error detector ==16992== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16992== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16992== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info ==16992== Parent PID: 16034 ==16992== ==16992== ==16992== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16992== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16992== at 0x5014536: __open_nocancel (open64_nocancel.c:39) ==16992== by 0x4F98BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16992== by 0xFF2989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFF29A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFF28C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFF28F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFDF8159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xACF30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xAD2A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0x7A60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16992== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16992== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16992== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16992== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16992== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16992== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16992== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16992== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16992== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16992== Open file descriptor 9: ==16992== at 0x502296B: eventfd (syscall-template.S:120) ==16992== by 0xFF89188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF87395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF87704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF879F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFEEE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFEEE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFDF8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xACF30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xAD2A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0x7A60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16992== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16992== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16992== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16992== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16992== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16992== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16992== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16992== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16992== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16992== Open file descriptor 8: ==16992== at 0x50132BB: pipe2 (syscall-template.S:120) ==16992== by 0xFF88F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF8B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF8B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF878AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFEEE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFEEE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFDF8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xACF30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xAD2A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0x7A60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16992== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16992== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16992== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16992== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16992== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16992== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16992== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16992== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16992== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16992== Open file descriptor 7: ==16992== at 0x50132BB: pipe2 (syscall-template.S:120) ==16992== by 0xFF88F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF8B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF8B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF878AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFEEE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFEEE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFDF8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xACF30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xAD2A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0x7A60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16992== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16992== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16992== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16992== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16992== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16992== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16992== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16992== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16992== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16992== Open file descriptor 4: ==16992== at 0x502346B: epoll_create1 (syscall-template.S:120) ==16992== by 0xFF8B6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFF878AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16992== by 0xFEEE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFEEE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xFDF8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16992== by 0xACF30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xACF018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0xAD2A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16992== by 0x7A60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16992== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16992== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16992== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16992== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16992== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16992== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16992== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16992== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16992== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16992== ==16992== HEAP SUMMARY: ==16992== in use at exit: 126,974 bytes in 909 blocks ==16992== total heap usage: 27,870 allocs, 26,961 frees, 10,422,158 bytes allocated ==16992== ==16992== LEAK SUMMARY: ==16992== definitely lost: 0 bytes in 0 blocks ==16992== indirectly lost: 0 bytes in 0 blocks ==16992== possibly lost: 0 bytes in 0 blocks ==16992== still reachable: 11,917 bytes in 44 blocks ==16992== suppressed: 115,057 bytes in 865 blocks ==16992== Reachable blocks (those to which a pointer was found) are not shown. ==16992== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16992== ==16992== For lists of detected and suppressed errors, rerun with: -s ==16992== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)