==16964== Memcheck, a memory error detector ==16964== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16964== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16964== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info ==16964== Parent PID: 16034 ==16964== ==16964== ==16964== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16964== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16964== at 0x903E536: __open_nocancel (open64_nocancel.c:39) ==16964== by 0x8FC2BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16964== by 0xD81289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD812A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD811C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD811F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD6E1159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0x92BA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92BF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92C02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92B718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92F1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0xA2A5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16964== by 0x694C2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16964== by 0x694C327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16964== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16964== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16964== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16964== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16964== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16964== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16964== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16964== Open file descriptor 9: ==16964== at 0x904C96B: eventfd (syscall-template.S:120) ==16964== by 0xD872188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD870395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD870704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD8709F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD7D70D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD7D71E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD6E1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0x92BA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92BF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92C02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92B718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92F1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0xA2A5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16964== by 0x694C2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16964== by 0x694C327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16964== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16964== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16964== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16964== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16964== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16964== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16964== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16964== Open file descriptor 8: ==16964== at 0x903D2BB: pipe2 (syscall-template.S:120) ==16964== by 0xD871F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD874579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD874774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD8708AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD7D70D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD7D71E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD6E1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0x92BA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92BF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92C02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92B718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92F1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0xA2A5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16964== by 0x694C2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16964== by 0x694C327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16964== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16964== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16964== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16964== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16964== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16964== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16964== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16964== Open file descriptor 7: ==16964== at 0x903D2BB: pipe2 (syscall-template.S:120) ==16964== by 0xD871F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD874579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD874774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD8708AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD7D70D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD7D71E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD6E1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0x92BA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92BF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92C02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92B718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92F1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0xA2A5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16964== by 0x694C2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16964== by 0x694C327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16964== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16964== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16964== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16964== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16964== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16964== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16964== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16964== Open file descriptor 6: ==16964== at 0x904D46B: epoll_create1 (syscall-template.S:120) ==16964== by 0xD8746FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD8708AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16964== by 0xD7D70D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD7D71E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0xD6E1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16964== by 0x92BA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92BF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92C02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92B718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0x92F1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16964== by 0xA2A5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16964== by 0x694C2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16964== by 0x694C327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16964== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16964== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16964== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16964== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16964== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16964== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==16964== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16964== ==16964== HEAP SUMMARY: ==16964== in use at exit: 126,975 bytes in 909 blocks ==16964== total heap usage: 28,511 allocs, 27,602 frees, 10,861,660 bytes allocated ==16964== ==16964== LEAK SUMMARY: ==16964== definitely lost: 0 bytes in 0 blocks ==16964== indirectly lost: 0 bytes in 0 blocks ==16964== possibly lost: 0 bytes in 0 blocks ==16964== still reachable: 11,909 bytes in 44 blocks ==16964== suppressed: 115,066 bytes in 865 blocks ==16964== Reachable blocks (those to which a pointer was found) are not shown. ==16964== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16964== ==16964== For lists of detected and suppressed errors, rerun with: -s ==16964== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)