==31307== Memcheck, a memory error detector
==31307== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==31307== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==31307== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==31307== Parent PID: 16402
==31307== 
==31307== 
==31307== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==31307== Open file descriptor 10: /dev/shm/open_mpi.0000
==31307==    at 0x13288536: __open_nocancel (open64_nocancel.c:39)
==31307==    by 0x1320CBC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==31307==    by 0x1880E89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x1880EA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x1880DC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x1880DF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x186DD159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x107AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0xF78B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31307==    by 0xEE9E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31307==    by 0xEE9E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31307==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31307==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31307==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31307==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31307==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31307==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==31307== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31307== Open file descriptor 9:
==31307==    at 0x1329696B: eventfd (syscall-template.S:120)
==31307==    by 0x1886E188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x1886C395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x1886C704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x1886C9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x187D30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x187D31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x186DD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x107AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0xF78B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31307==    by 0xEE9E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31307==    by 0xEE9E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31307==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31307==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31307==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31307==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31307==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31307==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==31307== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31307== Open file descriptor 8:
==31307==    at 0x132872BB: pipe2 (syscall-template.S:120)
==31307==    by 0x1886DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x18870579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x18870774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x1886C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x187D30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x187D31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x186DD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x107AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0xF78B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31307==    by 0xEE9E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31307==    by 0xEE9E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31307==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31307==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31307==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31307==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31307==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31307==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==31307== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31307== Open file descriptor 7:
==31307==    at 0x132872BB: pipe2 (syscall-template.S:120)
==31307==    by 0x1886DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x18870579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x18870774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x1886C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x187D30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x187D31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x186DD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x107AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0xF78B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31307==    by 0xEE9E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31307==    by 0xEE9E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31307==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31307==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31307==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31307==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31307==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31307==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==31307== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31307== Open file descriptor 4:
==31307==    at 0x1329746B: epoll_create1 (syscall-template.S:120)
==31307==    by 0x188706FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x1886C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31307==    by 0x187D30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x187D31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x186DD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31307==    by 0x107AD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107B32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107AA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0x107E4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31307==    by 0xF78B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31307==    by 0xEE9E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31307==    by 0xEE9E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31307==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31307==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31307==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31307==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31307==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31307==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==31307== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31307== 
==31307== HEAP SUMMARY:
==31307==     in use at exit: 128,764 bytes in 906 blocks
==31307==   total heap usage: 1,384,530 allocs, 1,383,624 frees, 72,090,333 bytes allocated
==31307== 
==31307== LEAK SUMMARY:
==31307==    definitely lost: 0 bytes in 0 blocks
==31307==    indirectly lost: 0 bytes in 0 blocks
==31307==      possibly lost: 0 bytes in 0 blocks
==31307==    still reachable: 12,109 bytes in 46 blocks
==31307==         suppressed: 116,655 bytes in 860 blocks
==31307== Reachable blocks (those to which a pointer was found) are not shown.
==31307== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==31307== 
==31307== For lists of detected and suppressed errors, rerun with: -s
==31307== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 36 from 36)