==16456== Memcheck, a memory error detector ==16456== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16456== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16456== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestGaussianQuadratureRule -malloc_debug -malloc_dump -memory_info ==16456== Parent PID: 15610 ==16456== ==16456== ==16456== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16456== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16456== at 0x6DA2536: __open_nocancel (open64_nocancel.c:39) ==16456== by 0x6D26BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16456== by 0xD68689E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD686A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD685C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD685F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD555159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0x701F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x702449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x70252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x701C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x7056627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x8008446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16456== by 0x68602D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16456== by 0x6860327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16456== by 0x40120C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16456== by 0x400D48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16456== by 0x40100C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16456== by 0x400FEF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16456== by 0x4010635: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16456== by 0x400B852: main (TestGaussianQuadratureRule.cpp:19) ==16456== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16456== Open file descriptor 9: ==16456== at 0x6DB096B: eventfd (syscall-template.S:120) ==16456== by 0xD6E8188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6E6395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6E6704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6E69F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD64B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD64B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD555120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0x701F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x702449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x70252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x701C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x7056627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x8008446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16456== by 0x68602D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16456== by 0x6860327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16456== by 0x40120C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16456== by 0x400D48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16456== by 0x40100C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16456== by 0x400FEF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16456== by 0x4010635: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16456== by 0x400B852: main (TestGaussianQuadratureRule.cpp:19) ==16456== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16456== Open file descriptor 8: ==16456== at 0x6DA12BB: pipe2 (syscall-template.S:120) ==16456== by 0xD6E7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6EA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6EA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6E68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD64B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD64B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD555120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0x701F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x702449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x70252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x701C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x7056627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x8008446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16456== by 0x68602D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16456== by 0x6860327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16456== by 0x40120C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16456== by 0x400D48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16456== by 0x40100C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16456== by 0x400FEF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16456== by 0x4010635: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16456== by 0x400B852: main (TestGaussianQuadratureRule.cpp:19) ==16456== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16456== Open file descriptor 7: ==16456== at 0x6DA12BB: pipe2 (syscall-template.S:120) ==16456== by 0xD6E7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6EA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6EA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6E68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD64B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD64B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD555120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0x701F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x702449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x70252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x701C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x7056627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x8008446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16456== by 0x68602D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16456== by 0x6860327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16456== by 0x40120C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16456== by 0x400D48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16456== by 0x40100C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16456== by 0x400FEF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16456== by 0x4010635: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16456== by 0x400B852: main (TestGaussianQuadratureRule.cpp:19) ==16456== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16456== Open file descriptor 6: ==16456== at 0x6DB146B: epoll_create1 (syscall-template.S:120) ==16456== by 0xD6EA6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD6E68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16456== by 0xD64B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD64B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0xD555120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16456== by 0x701F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x702449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x70252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x701C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x7056627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16456== by 0x8008446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16456== by 0x68602D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16456== by 0x6860327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16456== by 0x40120C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16456== by 0x400D48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16456== by 0x40100C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16456== by 0x400FEF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16456== by 0x4010635: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16456== by 0x400B852: main (TestGaussianQuadratureRule.cpp:19) ==16456== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16456== ==16456== HEAP SUMMARY: ==16456== in use at exit: 104,530 bytes in 636 blocks ==16456== total heap usage: 27,046 allocs, 26,410 frees, 8,404,817 bytes allocated ==16456== ==16456== LEAK SUMMARY: ==16456== definitely lost: 0 bytes in 0 blocks ==16456== indirectly lost: 0 bytes in 0 blocks ==16456== possibly lost: 0 bytes in 0 blocks ==16456== still reachable: 11,909 bytes in 44 blocks ==16456== suppressed: 92,621 bytes in 592 blocks ==16456== Reachable blocks (those to which a pointer was found) are not shown. ==16456== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16456== ==16456== For lists of detected and suppressed errors, rerun with: -s ==16456== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)