==16536== Memcheck, a memory error detector
==16536== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16536== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16536== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info
==16536== Parent PID: 15906
==16536== 
==16536== 
==16536== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16536== Open file descriptor 10: /dev/shm/open_mpi.0000
==16536==    at 0x132FA536: __open_nocancel (open64_nocancel.c:39)
==16536==    by 0x1327EBC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16536==    by 0x1888089E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x18880A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1887FC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1887FF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1874F159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1081F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1082449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x108252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1081C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x10856627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0xF7FD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16536==    by 0xEF102D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16536==    by 0xEF10327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16536==    by 0x4049BB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16536==    by 0x40411E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16536==    by 0x4044CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16536==    by 0x4044AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16536==    by 0x404529B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16536==    by 0x403F218: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19)
==16536== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16536== Open file descriptor 9:
==16536==    at 0x1330896B: eventfd (syscall-template.S:120)
==16536==    by 0x188E0188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188DE395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188DE704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188DE9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188450D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x188451E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1874F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1081F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1082449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x108252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1081C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x10856627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0xF7FD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16536==    by 0xEF102D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16536==    by 0xEF10327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16536==    by 0x4049BB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16536==    by 0x40411E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16536==    by 0x4044CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16536==    by 0x4044AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16536==    by 0x404529B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16536==    by 0x403F218: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19)
==16536== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16536== Open file descriptor 8:
==16536==    at 0x132F92BB: pipe2 (syscall-template.S:120)
==16536==    by 0x188DFF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188E2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188E2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188DE8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188450D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x188451E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1874F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1081F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1082449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x108252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1081C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x10856627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0xF7FD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16536==    by 0xEF102D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16536==    by 0xEF10327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16536==    by 0x4049BB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16536==    by 0x40411E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16536==    by 0x4044CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16536==    by 0x4044AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16536==    by 0x404529B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16536==    by 0x403F218: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19)
==16536== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16536== Open file descriptor 7:
==16536==    at 0x132F92BB: pipe2 (syscall-template.S:120)
==16536==    by 0x188DFF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188E2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188E2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188DE8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188450D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x188451E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1874F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1081F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1082449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x108252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1081C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x10856627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0xF7FD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16536==    by 0xEF102D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16536==    by 0xEF10327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16536==    by 0x4049BB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16536==    by 0x40411E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16536==    by 0x4044CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16536==    by 0x4044AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16536==    by 0x404529B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16536==    by 0x403F218: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19)
==16536== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16536== Open file descriptor 6:
==16536==    at 0x1330946B: epoll_create1 (syscall-template.S:120)
==16536==    by 0x188E26FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188DE8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16536==    by 0x188450D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x188451E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1874F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16536==    by 0x1081F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1082449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x108252C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x1081C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0x10856627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16536==    by 0xF7FD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16536==    by 0xEF102D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16536==    by 0xEF10327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16536==    by 0x4049BB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16536==    by 0x40411E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16536==    by 0x4044CCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16536==    by 0x4044AF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16536==    by 0x404529B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16536==    by 0x403F218: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19)
==16536== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16536== 
==16536== HEAP SUMMARY:
==16536==     in use at exit: 126,477 bytes in 902 blocks
==16536==   total heap usage: 215,272 allocs, 214,370 frees, 37,662,447 bytes allocated
==16536== 
==16536== LEAK SUMMARY:
==16536==    definitely lost: 0 bytes in 0 blocks
==16536==    indirectly lost: 0 bytes in 0 blocks
==16536==      possibly lost: 0 bytes in 0 blocks
==16536==    still reachable: 11,981 bytes in 45 blocks
==16536==         suppressed: 114,496 bytes in 857 blocks
==16536== Reachable blocks (those to which a pointer was found) are not shown.
==16536== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16536== 
==16536== For lists of detected and suppressed errors, rerun with: -s
==16536== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)