==16831== Memcheck, a memory error detector ==16831== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16831== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16831== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info ==16831== Parent PID: 15939 ==16831== ==16831== ==16831== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16831== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16831== at 0x5014536: __open_nocancel (open64_nocancel.c:39) ==16831== by 0x4F98BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16831== by 0xFE4089E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFE40A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFE3FC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFE3FF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFD0F159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16831== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16831== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16831== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16831== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16831== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16831== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16831== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16831== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16831== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16831== Open file descriptor 9: ==16831== at 0x502296B: eventfd (syscall-template.S:120) ==16831== by 0xFEA0188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE9E395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE9E704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE9E9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE050D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFE051E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFD0F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16831== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16831== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16831== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16831== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16831== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16831== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16831== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16831== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16831== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16831== Open file descriptor 8: ==16831== at 0x50132BB: pipe2 (syscall-template.S:120) ==16831== by 0xFE9FF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFEA2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFEA2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE9E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE050D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFE051E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFD0F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16831== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16831== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16831== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16831== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16831== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16831== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16831== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16831== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16831== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16831== Open file descriptor 7: ==16831== at 0x50132BB: pipe2 (syscall-template.S:120) ==16831== by 0xFE9FF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFEA2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFEA2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE9E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE050D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFE051E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFD0F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16831== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16831== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16831== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16831== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16831== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16831== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16831== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16831== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16831== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16831== Open file descriptor 6: ==16831== at 0x502346B: epoll_create1 (syscall-template.S:120) ==16831== by 0xFEA26FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE9E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16831== by 0xFE050D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFE051E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xFD0F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16831== by 0xAC090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0xAC40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16831== by 0x7976446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16831== by 0x4AD22D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16831== by 0x4AD2327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16831== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16831== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16831== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16831== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16831== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16831== by 0x401B012: main (TestMaterialLaws.cpp:19) ==16831== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16831== ==16831== HEAP SUMMARY: ==16831== in use at exit: 126,388 bytes in 901 blocks ==16831== total heap usage: 27,800 allocs, 26,899 frees, 10,417,484 bytes allocated ==16831== ==16831== LEAK SUMMARY: ==16831== definitely lost: 0 bytes in 0 blocks ==16831== indirectly lost: 0 bytes in 0 blocks ==16831== possibly lost: 0 bytes in 0 blocks ==16831== still reachable: 11,917 bytes in 44 blocks ==16831== suppressed: 114,471 bytes in 857 blocks ==16831== Reachable blocks (those to which a pointer was found) are not shown. ==16831== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16831== ==16831== For lists of detected and suppressed errors, rerun with: -s ==16831== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)