==15003== Memcheck, a memory error detector
==15003== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==15003== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==15003== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModels -malloc_debug -malloc_dump -memory_info
==15003== Parent PID: 13994
==15003== 
==15003== 
==15003== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==15003== Open file descriptor 10: /dev/shm/open_mpi.0000
==15003==    at 0xA4B0536: __open_nocancel (open64_nocancel.c:39)
==15003==    by 0xA434BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==15003==    by 0x11D5F89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11D5FA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11D5EC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11D5EF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11C2E159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x9D4B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D5049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D4818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D82627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x89B0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15003==    by 0x9C742D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15003==    by 0x9C74327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15003==    by 0x402DAC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15003==    by 0x4027B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15003==    by 0x402ACA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15003==    by 0x402AAD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15003==    by 0x402B219: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15003==    by 0x4022B22: main (TestIonicModels.cpp:19)
==15003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15003== Open file descriptor 9:
==15003==    at 0xA4BE96B: eventfd (syscall-template.S:120)
==15003==    by 0x11DBF188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DBD395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DBD704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DBD9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11D240D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11D241E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11C2E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x9D4B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D5049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D4818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D82627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x89B0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15003==    by 0x9C742D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15003==    by 0x9C74327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15003==    by 0x402DAC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15003==    by 0x4027B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15003==    by 0x402ACA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15003==    by 0x402AAD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15003==    by 0x402B219: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15003==    by 0x4022B22: main (TestIonicModels.cpp:19)
==15003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15003== Open file descriptor 8:
==15003==    at 0xA4AF2BB: pipe2 (syscall-template.S:120)
==15003==    by 0x11DBEF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DC1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DC1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DBD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11D240D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11D241E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11C2E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x9D4B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D5049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D4818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D82627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x89B0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15003==    by 0x9C742D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15003==    by 0x9C74327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15003==    by 0x402DAC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15003==    by 0x4027B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15003==    by 0x402ACA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15003==    by 0x402AAD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15003==    by 0x402B219: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15003==    by 0x4022B22: main (TestIonicModels.cpp:19)
==15003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15003== Open file descriptor 7:
==15003==    at 0xA4AF2BB: pipe2 (syscall-template.S:120)
==15003==    by 0x11DBEF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DC1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DC1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DBD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11D240D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11D241E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11C2E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x9D4B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D5049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D4818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D82627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x89B0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15003==    by 0x9C742D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15003==    by 0x9C74327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15003==    by 0x402DAC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15003==    by 0x4027B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15003==    by 0x402ACA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15003==    by 0x402AAD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15003==    by 0x402B219: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15003==    by 0x4022B22: main (TestIonicModels.cpp:19)
==15003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15003== Open file descriptor 6:
==15003==    at 0xA4BF46B: epoll_create1 (syscall-template.S:120)
==15003==    by 0x11DC16FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11DBD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15003==    by 0x11D240D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11D241E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x11C2E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15003==    by 0x9D4B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D5049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D4818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x9D82627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15003==    by 0x89B0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15003==    by 0x9C742D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15003==    by 0x9C74327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15003==    by 0x402DAC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15003==    by 0x4027B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15003==    by 0x402ACA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15003==    by 0x402AAD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15003==    by 0x402B219: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15003==    by 0x4022B22: main (TestIonicModels.cpp:19)
==15003== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15003== 
==15003== HEAP SUMMARY:
==15003==     in use at exit: 128,229 bytes in 901 blocks
==15003==   total heap usage: 1,872,431 allocs, 1,871,530 frees, 1,741,889,517 bytes allocated
==15003== 
==15003== LEAK SUMMARY:
==15003==    definitely lost: 0 bytes in 0 blocks
==15003==    indirectly lost: 0 bytes in 0 blocks
==15003==      possibly lost: 0 bytes in 0 blocks
==15003==    still reachable: 13,833 bytes in 48 blocks
==15003==         suppressed: 114,396 bytes in 853 blocks
==15003== Reachable blocks (those to which a pointer was found) are not shown.
==15003== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==15003== 
==15003== For lists of detected and suppressed errors, rerun with: -s
==15003== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)