==15654== Memcheck, a memory error detector ==15654== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15654== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15654== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestConstBoundaryCondition -malloc_debug -malloc_dump -memory_info ==15654== Parent PID: 14879 ==15654== ==15654== ==15654== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15654== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15654== at 0x6CD3536: __open_nocancel (open64_nocancel.c:39) ==15654== by 0x6C57BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15654== by 0xD69989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD699A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD698C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD698F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD568159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0x6F500E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F5549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F562C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F4D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F87627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x7F39446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15654== by 0x68732D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15654== by 0x6873327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15654== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15654== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15654== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15654== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15654== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15654== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15654== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15654== Open file descriptor 9: ==15654== at 0x6CE196B: eventfd (syscall-template.S:120) ==15654== by 0xD6FB188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6F9395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6F9704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6F99F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD65E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD65E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD568120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0x6F500E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F5549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F562C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F4D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F87627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x7F39446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15654== by 0x68732D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15654== by 0x6873327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15654== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15654== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15654== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15654== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15654== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15654== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15654== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15654== Open file descriptor 8: ==15654== at 0x6CD22BB: pipe2 (syscall-template.S:120) ==15654== by 0xD6FAF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6FD579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6FD774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6F98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD65E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD65E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD568120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0x6F500E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F5549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F562C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F4D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F87627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x7F39446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15654== by 0x68732D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15654== by 0x6873327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15654== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15654== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15654== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15654== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15654== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15654== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15654== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15654== Open file descriptor 7: ==15654== at 0x6CD22BB: pipe2 (syscall-template.S:120) ==15654== by 0xD6FAF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6FD579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6FD774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6F98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD65E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD65E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD568120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0x6F500E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F5549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F562C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F4D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F87627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x7F39446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15654== by 0x68732D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15654== by 0x6873327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15654== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15654== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15654== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15654== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15654== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15654== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15654== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15654== Open file descriptor 6: ==15654== at 0x6CE246B: epoll_create1 (syscall-template.S:120) ==15654== by 0xD6FD6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD6F98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15654== by 0xD65E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD65E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0xD568120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15654== by 0x6F500E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F5549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F562C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F4D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x6F87627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15654== by 0x7F39446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15654== by 0x68732D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15654== by 0x6873327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15654== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15654== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15654== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15654== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15654== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15654== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15654== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15654== ==15654== HEAP SUMMARY: ==15654== in use at exit: 126,389 bytes in 901 blocks ==15654== total heap usage: 27,379 allocs, 26,478 frees, 10,372,799 bytes allocated ==15654== ==15654== LEAK SUMMARY: ==15654== definitely lost: 0 bytes in 0 blocks ==15654== indirectly lost: 0 bytes in 0 blocks ==15654== possibly lost: 0 bytes in 0 blocks ==15654== still reachable: 11,909 bytes in 44 blocks ==15654== suppressed: 114,480 bytes in 857 blocks ==15654== Reachable blocks (those to which a pointer was found) are not shown. ==15654== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15654== ==15654== For lists of detected and suppressed errors, rerun with: -s ==15654== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)