==15590== Memcheck, a memory error detector ==15590== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15590== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15590== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingCoupledPdes -malloc_debug -malloc_dump -memory_info ==15590== Parent PID: 14879 ==15590== ==15590== ==15590== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15590== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15590== at 0xA952536: __open_nocancel (open64_nocancel.c:39) ==15590== by 0xA8D6BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15590== by 0xFD1289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFD12A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFD11C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFD11F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFBE1159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xAB470E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB7E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0x7247446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15590== by 0x695A2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15590== by 0x695A327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15590== by 0x403B7C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15590== by 0x4035EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15590== by 0x40390DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15590== by 0x4038F71: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15590== by 0x403966B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15590== by 0x4034318: main (TestSolvingCoupledPdes.cpp:18) ==15590== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15590== Open file descriptor 9: ==15590== at 0xA96096B: eventfd (syscall-template.S:120) ==15590== by 0xFD72188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD70395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD70704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD709F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFCD70D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFCD71E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFBE1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xAB470E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB7E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0x7247446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15590== by 0x695A2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15590== by 0x695A327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15590== by 0x403B7C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15590== by 0x4035EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15590== by 0x40390DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15590== by 0x4038F71: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15590== by 0x403966B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15590== by 0x4034318: main (TestSolvingCoupledPdes.cpp:18) ==15590== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15590== Open file descriptor 8: ==15590== at 0xA9512BB: pipe2 (syscall-template.S:120) ==15590== by 0xFD71F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD74579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD74774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD708AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFCD70D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFCD71E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFBE1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xAB470E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB7E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0x7247446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15590== by 0x695A2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15590== by 0x695A327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15590== by 0x403B7C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15590== by 0x4035EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15590== by 0x40390DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15590== by 0x4038F71: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15590== by 0x403966B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15590== by 0x4034318: main (TestSolvingCoupledPdes.cpp:18) ==15590== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15590== Open file descriptor 7: ==15590== at 0xA9512BB: pipe2 (syscall-template.S:120) ==15590== by 0xFD71F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD74579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD74774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD708AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFCD70D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFCD71E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFBE1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xAB470E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB7E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0x7247446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15590== by 0x695A2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15590== by 0x695A327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15590== by 0x403B7C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15590== by 0x4035EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15590== by 0x40390DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15590== by 0x4038F71: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15590== by 0x403966B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15590== by 0x4034318: main (TestSolvingCoupledPdes.cpp:18) ==15590== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15590== Open file descriptor 6: ==15590== at 0xA96146B: epoll_create1 (syscall-template.S:120) ==15590== by 0xFD746FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFD708AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15590== by 0xFCD70D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFCD71E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xFBE1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15590== by 0xAB470E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB4418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0xAB7E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15590== by 0x7247446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15590== by 0x695A2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15590== by 0x695A327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15590== by 0x403B7C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15590== by 0x4035EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15590== by 0x40390DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15590== by 0x4038F71: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15590== by 0x403966B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15590== by 0x4034318: main (TestSolvingCoupledPdes.cpp:18) ==15590== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15590== ==15590== HEAP SUMMARY: ==15590== in use at exit: 126,385 bytes in 901 blocks ==15590== total heap usage: 342,606 allocs, 341,705 frees, 25,817,964 bytes allocated ==15590== ==15590== LEAK SUMMARY: ==15590== definitely lost: 0 bytes in 0 blocks ==15590== indirectly lost: 0 bytes in 0 blocks ==15590== possibly lost: 0 bytes in 0 blocks ==15590== still reachable: 11,909 bytes in 44 blocks ==15590== suppressed: 114,476 bytes in 857 blocks ==15590== Reachable blocks (those to which a pointer was found) are not shown. ==15590== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15590== ==15590== For lists of detected and suppressed errors, rerun with: -s ==15590== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)