==16365== Memcheck, a memory error detector ==16365== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16365== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16365== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestVoltageInterpolaterOntoMechanicsMesh -malloc_debug -malloc_dump -memory_info ==16365== Parent PID: 13917 ==16365== ==16365== ==16365== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16365== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16365== at 0xDC35536: __open_nocancel (open64_nocancel.c:39) ==16365== by 0xDBB9BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16365== by 0x1389789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x13897A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x13896C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x13896F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x13766159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0xDF810E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF8649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF872C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF7E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDFB8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16365== by 0xD7EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16365== by 0xD7EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16365== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16365== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16365== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16365== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16365== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16365== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==16365== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16365== Open file descriptor 9: ==16365== at 0xDC4396B: eventfd (syscall-template.S:120) ==16365== by 0x138F7188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F5395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F5704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F59F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x1385C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x1385C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x13766120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0xDF810E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF8649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF872C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF7E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDFB8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16365== by 0xD7EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16365== by 0xD7EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16365== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16365== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16365== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16365== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16365== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16365== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==16365== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16365== Open file descriptor 8: ==16365== at 0xDC342BB: pipe2 (syscall-template.S:120) ==16365== by 0x138F6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x1385C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x1385C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x13766120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0xDF810E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF8649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF872C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF7E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDFB8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16365== by 0xD7EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16365== by 0xD7EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16365== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16365== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16365== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16365== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16365== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16365== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==16365== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16365== Open file descriptor 7: ==16365== at 0xDC342BB: pipe2 (syscall-template.S:120) ==16365== by 0x138F6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x1385C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x1385C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x13766120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0xDF810E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF8649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF872C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF7E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDFB8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16365== by 0xD7EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16365== by 0xD7EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16365== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16365== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16365== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16365== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16365== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16365== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==16365== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16365== Open file descriptor 4: ==16365== at 0xDC4446B: epoll_create1 (syscall-template.S:120) ==16365== by 0x138F96FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x138F58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16365== by 0x1385C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x1385C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0x13766120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16365== by 0xDF810E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF8649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF872C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDF7E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0xDFB8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16365== by 0x8906446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16365== by 0xD7EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16365== by 0xD7EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16365== by 0x4015344: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16365== by 0x40105E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16365== by 0x401301E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16365== by 0x4012EB1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16365== by 0x40135AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16365== by 0x400EA38: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) ==16365== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16365== ==16365== HEAP SUMMARY: ==16365== in use at exit: 126,884 bytes in 910 blocks ==16365== total heap usage: 601,884 allocs, 600,974 frees, 205,756,927 bytes allocated ==16365== ==16365== LEAK SUMMARY: ==16365== definitely lost: 0 bytes in 0 blocks ==16365== indirectly lost: 0 bytes in 0 blocks ==16365== possibly lost: 0 bytes in 0 blocks ==16365== still reachable: 11,957 bytes in 44 blocks ==16365== suppressed: 114,927 bytes in 866 blocks ==16365== Reachable blocks (those to which a pointer was found) are not shown. ==16365== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16365== ==16365== For lists of detected and suppressed errors, rerun with: -s ==16365== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 42 from 34)