==15245== Memcheck, a memory error detector ==15245== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15245== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15245== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info ==15245== Parent PID: 14714 ==15245== ==15245== ==15245== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15245== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15245== at 0x1165A536: __open_nocancel (open64_nocancel.c:39) ==15245== by 0x115DEBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15245== by 0x169C089E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x169C0A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x169BFC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x169BFF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x1688F159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0xEC610E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC6649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC672C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC5E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC98627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xDC62446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15245== by 0xD30B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15245== by 0xD30B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15245== by 0x4025C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15245== by 0x4020051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15245== by 0x402304E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15245== by 0x4022E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15245== by 0x402361B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15245== by 0x401E088: main (TestCaBasedDivisionRules.cpp:19) ==15245== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15245== Open file descriptor 9: ==15245== at 0x1166896B: eventfd (syscall-template.S:120) ==15245== by 0x16A20188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A1E395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A1E704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A1E9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x169850D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x169851E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x1688F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0xEC610E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC6649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC672C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC5E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC98627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xDC62446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15245== by 0xD30B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15245== by 0xD30B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15245== by 0x4025C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15245== by 0x4020051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15245== by 0x402304E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15245== by 0x4022E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15245== by 0x402361B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15245== by 0x401E088: main (TestCaBasedDivisionRules.cpp:19) ==15245== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15245== Open file descriptor 8: ==15245== at 0x116592BB: pipe2 (syscall-template.S:120) ==15245== by 0x16A1FF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A22579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A22774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A1E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x169850D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x169851E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x1688F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0xEC610E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC6649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC672C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC5E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC98627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xDC62446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15245== by 0xD30B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15245== by 0xD30B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15245== by 0x4025C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15245== by 0x4020051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15245== by 0x402304E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15245== by 0x4022E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15245== by 0x402361B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15245== by 0x401E088: main (TestCaBasedDivisionRules.cpp:19) ==15245== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15245== Open file descriptor 7: ==15245== at 0x116592BB: pipe2 (syscall-template.S:120) ==15245== by 0x16A1FF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A22579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A22774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A1E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x169850D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x169851E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x1688F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0xEC610E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC6649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC672C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC5E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC98627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xDC62446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15245== by 0xD30B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15245== by 0xD30B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15245== by 0x4025C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15245== by 0x4020051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15245== by 0x402304E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15245== by 0x4022E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15245== by 0x402361B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15245== by 0x401E088: main (TestCaBasedDivisionRules.cpp:19) ==15245== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15245== Open file descriptor 4: ==15245== at 0x1166946B: epoll_create1 (syscall-template.S:120) ==15245== by 0x16A226FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x16A1E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15245== by 0x169850D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x169851E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0x1688F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15245== by 0xEC610E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC6649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC672C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC5E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xEC98627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15245== by 0xDC62446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15245== by 0xD30B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15245== by 0xD30B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15245== by 0x4025C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15245== by 0x4020051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15245== by 0x402304E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15245== by 0x4022E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15245== by 0x402361B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15245== by 0x401E088: main (TestCaBasedDivisionRules.cpp:19) ==15245== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15245== ==15245== HEAP SUMMARY: ==15245== in use at exit: 126,475 bytes in 903 blocks ==15245== total heap usage: 36,353 allocs, 35,450 frees, 11,094,488 bytes allocated ==15245== ==15245== LEAK SUMMARY: ==15245== definitely lost: 0 bytes in 0 blocks ==15245== indirectly lost: 0 bytes in 0 blocks ==15245== possibly lost: 0 bytes in 0 blocks ==15245== still reachable: 11,997 bytes in 46 blocks ==15245== suppressed: 114,478 bytes in 857 blocks ==15245== Reachable blocks (those to which a pointer was found) are not shown. ==15245== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15245== ==15245== For lists of detected and suppressed errors, rerun with: -s ==15245== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)