==12869== Memcheck, a memory error detector
==12869== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==12869== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==12869== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellBetaCateninWriter -malloc_debug -malloc_dump -memory_info
==12869== Parent PID: 12788
==12869== 
==12869== 
==12869== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==12869== Open file descriptor 10: /dev/shm/open_mpi.0000
==12869==    at 0x12EBB536: __open_nocancel (open64_nocancel.c:39)
==12869==    by 0x12E3FBC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==12869==    by 0x17C9489E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17C94A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17C93C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17C93F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17B63159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x1388C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1389149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1388918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x144A3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12869==    by 0x12A7E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12869==    by 0x12A7E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12869==    by 0x402CA84: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12869==    by 0x4025111: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12869==    by 0x402810E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12869==    by 0x4027FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12869==    by 0x402869B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12869==    by 0x4023568: main (TestCellBetaCateninWriter.cpp:18)
==12869== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12869== Open file descriptor 9:
==12869==    at 0x12EC996B: eventfd (syscall-template.S:120)
==12869==    by 0x17CF4188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF2395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF2704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF29F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17C590D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17C591E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17B63120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x1388C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1389149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1388918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x144A3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12869==    by 0x12A7E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12869==    by 0x12A7E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12869==    by 0x402CA84: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12869==    by 0x4025111: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12869==    by 0x402810E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12869==    by 0x4027FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12869==    by 0x402869B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12869==    by 0x4023568: main (TestCellBetaCateninWriter.cpp:18)
==12869== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12869== Open file descriptor 8:
==12869==    at 0x12EBA2BB: pipe2 (syscall-template.S:120)
==12869==    by 0x17CF3F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF6579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF6774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17C590D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17C591E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17B63120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x1388C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1389149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1388918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x144A3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12869==    by 0x12A7E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12869==    by 0x12A7E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12869==    by 0x402CA84: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12869==    by 0x4025111: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12869==    by 0x402810E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12869==    by 0x4027FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12869==    by 0x402869B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12869==    by 0x4023568: main (TestCellBetaCateninWriter.cpp:18)
==12869== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12869== Open file descriptor 7:
==12869==    at 0x12EBA2BB: pipe2 (syscall-template.S:120)
==12869==    by 0x17CF3F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF6579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF6774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17C590D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17C591E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17B63120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x1388C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1389149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1388918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x144A3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12869==    by 0x12A7E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12869==    by 0x12A7E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12869==    by 0x402CA84: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12869==    by 0x4025111: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12869==    by 0x402810E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12869==    by 0x4027FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12869==    by 0x402869B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12869==    by 0x4023568: main (TestCellBetaCateninWriter.cpp:18)
==12869== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12869== Open file descriptor 6:
==12869==    at 0x12ECA46B: epoll_create1 (syscall-template.S:120)
==12869==    by 0x17CF66FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17CF28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12869==    by 0x17C590D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17C591E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x17B63120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12869==    by 0x1388C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1389149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x1388918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x138C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12869==    by 0x144A3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12869==    by 0x12A7E2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12869==    by 0x12A7E327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12869==    by 0x402CA84: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12869==    by 0x4025111: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12869==    by 0x402810E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12869==    by 0x4027FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12869==    by 0x402869B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12869==    by 0x4023568: main (TestCellBetaCateninWriter.cpp:18)
==12869== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12869== 
==12869== HEAP SUMMARY:
==12869==     in use at exit: 129,023 bytes in 935 blocks
==12869==   total heap usage: 43,937 allocs, 43,002 frees, 13,254,392 bytes allocated
==12869== 
==12869== LEAK SUMMARY:
==12869==    definitely lost: 0 bytes in 0 blocks
==12869==    indirectly lost: 0 bytes in 0 blocks
==12869==      possibly lost: 0 bytes in 0 blocks
==12869==    still reachable: 12,069 bytes in 46 blocks
==12869==         suppressed: 116,954 bytes in 889 blocks
==12869== Reachable blocks (those to which a pointer was found) are not shown.
==12869== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==12869== 
==12869== For lists of detected and suppressed errors, rerun with: -s
==12869== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)