==15350== Memcheck, a memory error detector ==15350== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15350== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15350== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCentreBasedDivisionRules -malloc_debug -malloc_dump -memory_info ==15350== Parent PID: 14827 ==15350== ==15350== ==15350== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15350== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15350== at 0x132F3536: __open_nocancel (open64_nocancel.c:39) ==15350== by 0x13277BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15350== by 0x1883489E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x18834A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x18833C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x18833F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x18703159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x108180E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1084F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0xF819446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15350== by 0xEEC42D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15350== by 0xEEC4327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15350== by 0x40378C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15350== by 0x4031D51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15350== by 0x403486E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15350== by 0x4034701: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15350== by 0x4034DFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15350== by 0x40301A8: main (TestCentreBasedDivisionRules.cpp:18) ==15350== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15350== Open file descriptor 9: ==15350== at 0x1330196B: eventfd (syscall-template.S:120) ==15350== by 0x18894188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x18892395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x18892704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x188929F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x187F90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x187F91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x18703120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x108180E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1084F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0xF819446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15350== by 0xEEC42D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15350== by 0xEEC4327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15350== by 0x40378C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15350== by 0x4031D51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15350== by 0x403486E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15350== by 0x4034701: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15350== by 0x4034DFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15350== by 0x40301A8: main (TestCentreBasedDivisionRules.cpp:18) ==15350== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15350== Open file descriptor 8: ==15350== at 0x132F22BB: pipe2 (syscall-template.S:120) ==15350== by 0x18893F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x18896579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x18896774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x188928AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x187F90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x187F91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x18703120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x108180E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1084F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0xF819446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15350== by 0xEEC42D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15350== by 0xEEC4327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15350== by 0x40378C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15350== by 0x4031D51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15350== by 0x403486E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15350== by 0x4034701: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15350== by 0x4034DFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15350== by 0x40301A8: main (TestCentreBasedDivisionRules.cpp:18) ==15350== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15350== Open file descriptor 7: ==15350== at 0x132F22BB: pipe2 (syscall-template.S:120) ==15350== by 0x18893F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x18896579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x18896774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x188928AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x187F90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x187F91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x18703120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x108180E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1084F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0xF819446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15350== by 0xEEC42D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15350== by 0xEEC4327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15350== by 0x40378C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15350== by 0x4031D51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15350== by 0x403486E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15350== by 0x4034701: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15350== by 0x4034DFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15350== by 0x40301A8: main (TestCentreBasedDivisionRules.cpp:18) ==15350== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15350== Open file descriptor 5: ==15350== at 0x1330246B: epoll_create1 (syscall-template.S:120) ==15350== by 0x188966FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x188928AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15350== by 0x187F90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x187F91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x18703120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15350== by 0x108180E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1081518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0x1084F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15350== by 0xF819446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15350== by 0xEEC42D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15350== by 0xEEC4327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15350== by 0x40378C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15350== by 0x4031D51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15350== by 0x403486E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15350== by 0x4034701: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15350== by 0x4034DFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15350== by 0x40301A8: main (TestCentreBasedDivisionRules.cpp:18) ==15350== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15350== ==15350== HEAP SUMMARY: ==15350== in use at exit: 103,844 bytes in 630 blocks ==15350== total heap usage: 38,088 allocs, 37,458 frees, 9,864,731 bytes allocated ==15350== ==15350== LEAK SUMMARY: ==15350== definitely lost: 0 bytes in 0 blocks ==15350== indirectly lost: 0 bytes in 0 blocks ==15350== possibly lost: 0 bytes in 0 blocks ==15350== still reachable: 11,981 bytes in 45 blocks ==15350== suppressed: 91,863 bytes in 585 blocks ==15350== Reachable blocks (those to which a pointer was found) are not shown. ==15350== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15350== ==15350== For lists of detected and suppressed errors, rerun with: -s ==15350== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)