==14846== Memcheck, a memory error detector ==14846== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14846== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14846== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestGenericEventHandler -malloc_debug -malloc_dump -memory_info ==14846== Parent PID: 14763 ==14846== ==14846== ==14846== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14846== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14846== at 0x5182536: __open_nocancel (open64_nocancel.c:39) ==14846== by 0x5106BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14846== by 0x71AA89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x71AAA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x71A9C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x71A9F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x7079159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x4A1B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A2049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A1818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A52627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x5B73446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14846== by 0x49302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14846== by 0x4930327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14846== by 0x400E84A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14846== by 0x400944D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14846== by 0x400C88A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14846== by 0x400C6B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14846== by 0x400CDFD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14846== by 0x4007812: main (TestGenericEventHandler.cpp:19) ==14846== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14846== Open file descriptor 9: ==14846== at 0x519096B: eventfd (syscall-template.S:120) ==14846== by 0x720A188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x7208395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x7208704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x72089F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x716F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x716F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x7079120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x4A1B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A2049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A1818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A52627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x5B73446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14846== by 0x49302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14846== by 0x4930327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14846== by 0x400E84A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14846== by 0x400944D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14846== by 0x400C88A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14846== by 0x400C6B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14846== by 0x400CDFD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14846== by 0x4007812: main (TestGenericEventHandler.cpp:19) ==14846== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14846== Open file descriptor 8: ==14846== at 0x51812BB: pipe2 (syscall-template.S:120) ==14846== by 0x7209F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x720C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x720C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x72088AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x716F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x716F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x7079120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x4A1B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A2049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A1818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A52627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x5B73446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14846== by 0x49302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14846== by 0x4930327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14846== by 0x400E84A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14846== by 0x400944D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14846== by 0x400C88A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14846== by 0x400C6B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14846== by 0x400CDFD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14846== by 0x4007812: main (TestGenericEventHandler.cpp:19) ==14846== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14846== Open file descriptor 7: ==14846== at 0x51812BB: pipe2 (syscall-template.S:120) ==14846== by 0x7209F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x720C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x720C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x72088AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x716F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x716F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x7079120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x4A1B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A2049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A1818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A52627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x5B73446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14846== by 0x49302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14846== by 0x4930327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14846== by 0x400E84A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14846== by 0x400944D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14846== by 0x400C88A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14846== by 0x400C6B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14846== by 0x400CDFD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14846== by 0x4007812: main (TestGenericEventHandler.cpp:19) ==14846== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14846== Open file descriptor 5: ==14846== at 0x519146B: epoll_create1 (syscall-template.S:120) ==14846== by 0x720C6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x72088AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14846== by 0x716F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x716F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x7079120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14846== by 0x4A1B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A2049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A1818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x4A52627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14846== by 0x5B73446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14846== by 0x49302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14846== by 0x4930327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14846== by 0x400E84A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14846== by 0x400944D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14846== by 0x400C88A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14846== by 0x400C6B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14846== by 0x400CDFD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14846== by 0x4007812: main (TestGenericEventHandler.cpp:19) ==14846== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14846== ==14846== HEAP SUMMARY: ==14846== in use at exit: 127,026 bytes in 929 blocks ==14846== total heap usage: 25,089 allocs, 24,160 frees, 10,148,322 bytes allocated ==14846== ==14846== LEAK SUMMARY: ==14846== definitely lost: 0 bytes in 0 blocks ==14846== indirectly lost: 0 bytes in 0 blocks ==14846== possibly lost: 0 bytes in 0 blocks ==14846== still reachable: 10,073 bytes in 40 blocks ==14846== suppressed: 116,953 bytes in 889 blocks ==14846== Reachable blocks (those to which a pointer was found) are not shown. ==14846== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14846== ==14846== For lists of detected and suppressed errors, rerun with: -s ==14846== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)