==13370== Memcheck, a memory error detector ==13370== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13370== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13370== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==13370== Parent PID: 12914 ==13370== ==13370== ==13370== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13370== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13370== at 0x14CFC536: __open_nocancel (open64_nocancel.c:39) ==13370== by 0x14C80BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13370== by 0x1A26E89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A26EA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A26DC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A26DF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A13D159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x144B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13370== by 0x143EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13370== by 0x143EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13370== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13370== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13370== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13370== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13370== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13370== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13370== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13370== Open file descriptor 9: ==13370== at 0x14D0A96B: eventfd (syscall-template.S:120) ==13370== by 0x1A2CE188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2CC395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2CC704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2CC9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2330D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A2331E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A13D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x144B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13370== by 0x143EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13370== by 0x143EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13370== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13370== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13370== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13370== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13370== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13370== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13370== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13370== Open file descriptor 8: ==13370== at 0x14CFB2BB: pipe2 (syscall-template.S:120) ==13370== by 0x1A2CDF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2D0579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2D0774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2CC8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2330D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A2331E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A13D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x144B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13370== by 0x143EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13370== by 0x143EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13370== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13370== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13370== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13370== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13370== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13370== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13370== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13370== Open file descriptor 7: ==13370== at 0x14CFB2BB: pipe2 (syscall-template.S:120) ==13370== by 0x1A2CDF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2D0579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2D0774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2CC8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2330D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A2331E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A13D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x144B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13370== by 0x143EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13370== by 0x143EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13370== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13370== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13370== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13370== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13370== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13370== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13370== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13370== Open file descriptor 6: ==13370== at 0x14D0B46B: epoll_create1 (syscall-template.S:120) ==13370== by 0x1A2D06FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2CC8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13370== by 0x1A2330D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A2331E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x1A13D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13370== by 0x144B30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144B018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x144EA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13370== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13370== by 0x143EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13370== by 0x143EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13370== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13370== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13370== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13370== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13370== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13370== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13370== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13370== ==13370== HEAP SUMMARY: ==13370== in use at exit: 126,431 bytes in 901 blocks ==13370== total heap usage: 1,799,615 allocs, 1,798,714 frees, 118,223,814 bytes allocated ==13370== ==13370== LEAK SUMMARY: ==13370== definitely lost: 0 bytes in 0 blocks ==13370== indirectly lost: 0 bytes in 0 blocks ==13370== possibly lost: 0 bytes in 0 blocks ==13370== still reachable: 11,957 bytes in 44 blocks ==13370== suppressed: 114,474 bytes in 857 blocks ==13370== Reachable blocks (those to which a pointer was found) are not shown. ==13370== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13370== ==13370== For lists of detected and suppressed errors, rerun with: -s ==13370== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)