==14974== Memcheck, a memory error detector ==14974== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14974== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14974== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestBuskeForces -malloc_debug -malloc_dump -memory_info ==14974== Parent PID: 14595 ==14974== ==14974== ==14974== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14974== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14974== at 0x116D2536: __open_nocancel (open64_nocancel.c:39) ==14974== by 0x11656BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14974== by 0x163C989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x163C9A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x163C8C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x163C8F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x16298159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x11F200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x12B37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14974== by 0xEEB92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14974== by 0xEEB9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14974== by 0x402D0C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14974== by 0x4025291: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14974== by 0x402841E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14974== by 0x40282B1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14974== by 0x40289AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14974== by 0x40236E8: main (TestBuskeForces.cpp:18) ==14974== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14974== Open file descriptor 9: ==14974== at 0x116E096B: eventfd (syscall-template.S:120) ==14974== by 0x16429188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x16427395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x16427704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x164279F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x1638E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x1638E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x16298120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x11F200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x12B37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14974== by 0xEEB92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14974== by 0xEEB9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14974== by 0x402D0C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14974== by 0x4025291: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14974== by 0x402841E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14974== by 0x40282B1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14974== by 0x40289AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14974== by 0x40236E8: main (TestBuskeForces.cpp:18) ==14974== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14974== Open file descriptor 8: ==14974== at 0x116D12BB: pipe2 (syscall-template.S:120) ==14974== by 0x16428F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x1642B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x1642B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x164278AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x1638E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x1638E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x16298120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x11F200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x12B37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14974== by 0xEEB92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14974== by 0xEEB9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14974== by 0x402D0C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14974== by 0x4025291: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14974== by 0x402841E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14974== by 0x40282B1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14974== by 0x40289AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14974== by 0x40236E8: main (TestBuskeForces.cpp:18) ==14974== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14974== Open file descriptor 7: ==14974== at 0x116D12BB: pipe2 (syscall-template.S:120) ==14974== by 0x16428F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x1642B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x1642B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x164278AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x1638E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x1638E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x16298120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x11F200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x12B37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14974== by 0xEEB92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14974== by 0xEEB9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14974== by 0x402D0C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14974== by 0x4025291: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14974== by 0x402841E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14974== by 0x40282B1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14974== by 0x40289AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14974== by 0x40236E8: main (TestBuskeForces.cpp:18) ==14974== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14974== Open file descriptor 5: ==14974== at 0x116E146B: epoll_create1 (syscall-template.S:120) ==14974== by 0x1642B6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x164278AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14974== by 0x1638E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x1638E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x16298120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14974== by 0x11F200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x11F57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14974== by 0x12B37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14974== by 0xEEB92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14974== by 0xEEB9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14974== by 0x402D0C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14974== by 0x4025291: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14974== by 0x402841E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14974== by 0x40282B1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14974== by 0x40289AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14974== by 0x40236E8: main (TestBuskeForces.cpp:18) ==14974== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14974== ==14974== HEAP SUMMARY: ==14974== in use at exit: 104,570 bytes in 635 blocks ==14974== total heap usage: 37,167 allocs, 36,532 frees, 9,977,543 bytes allocated ==14974== ==14974== LEAK SUMMARY: ==14974== definitely lost: 0 bytes in 0 blocks ==14974== indirectly lost: 0 bytes in 0 blocks ==14974== possibly lost: 0 bytes in 0 blocks ==14974== still reachable: 11,981 bytes in 45 blocks ==14974== suppressed: 92,589 bytes in 590 blocks ==14974== Reachable blocks (those to which a pointer was found) are not shown. ==14974== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14974== ==14974== For lists of detected and suppressed errors, rerun with: -s ==14974== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)