==15156== Memcheck, a memory error detector ==15156== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15156== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15156== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info ==15156== Parent PID: 14632 ==15156== ==15156== ==15156== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15156== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15156== at 0x1164F536: __open_nocancel (open64_nocancel.c:39) ==15156== by 0x115D3BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15156== by 0x169B589E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x169B5A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x169B4C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x169B4F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x16884159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0xEC560E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC8D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xDC57446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15156== by 0xD3002D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15156== by 0xD300327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15156== by 0x4024C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15156== by 0x401F051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15156== by 0x402204E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15156== by 0x4021E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15156== by 0x402261B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15156== by 0x401D088: main (TestCaBasedDivisionRules.cpp:19) ==15156== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15156== Open file descriptor 9: ==15156== at 0x1165D96B: eventfd (syscall-template.S:120) ==15156== by 0x16A15188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A13395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A13704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A139F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x1697A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x1697A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x16884120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0xEC560E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC8D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xDC57446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15156== by 0xD3002D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15156== by 0xD300327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15156== by 0x4024C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15156== by 0x401F051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15156== by 0x402204E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15156== by 0x4021E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15156== by 0x402261B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15156== by 0x401D088: main (TestCaBasedDivisionRules.cpp:19) ==15156== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15156== Open file descriptor 8: ==15156== at 0x1164E2BB: pipe2 (syscall-template.S:120) ==15156== by 0x16A14F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A17579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A17774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A138AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x1697A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x1697A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x16884120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0xEC560E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC8D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xDC57446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15156== by 0xD3002D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15156== by 0xD300327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15156== by 0x4024C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15156== by 0x401F051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15156== by 0x402204E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15156== by 0x4021E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15156== by 0x402261B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15156== by 0x401D088: main (TestCaBasedDivisionRules.cpp:19) ==15156== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15156== Open file descriptor 7: ==15156== at 0x1164E2BB: pipe2 (syscall-template.S:120) ==15156== by 0x16A14F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A17579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A17774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A138AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x1697A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x1697A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x16884120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0xEC560E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC8D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xDC57446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15156== by 0xD3002D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15156== by 0xD300327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15156== by 0x4024C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15156== by 0x401F051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15156== by 0x402204E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15156== by 0x4021E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15156== by 0x402261B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15156== by 0x401D088: main (TestCaBasedDivisionRules.cpp:19) ==15156== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15156== Open file descriptor 6: ==15156== at 0x1165E46B: epoll_create1 (syscall-template.S:120) ==15156== by 0x16A176FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x16A138AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15156== by 0x1697A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x1697A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0x16884120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15156== by 0xEC560E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC5318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xEC8D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15156== by 0xDC57446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15156== by 0xD3002D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15156== by 0xD300327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15156== by 0x4024C23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15156== by 0x401F051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15156== by 0x402204E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15156== by 0x4021E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15156== by 0x402261B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15156== by 0x401D088: main (TestCaBasedDivisionRules.cpp:19) ==15156== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15156== ==15156== HEAP SUMMARY: ==15156== in use at exit: 126,476 bytes in 903 blocks ==15156== total heap usage: 36,354 allocs, 35,451 frees, 11,094,967 bytes allocated ==15156== ==15156== LEAK SUMMARY: ==15156== definitely lost: 0 bytes in 0 blocks ==15156== indirectly lost: 0 bytes in 0 blocks ==15156== possibly lost: 0 bytes in 0 blocks ==15156== still reachable: 11,997 bytes in 46 blocks ==15156== suppressed: 114,479 bytes in 857 blocks ==15156== Reachable blocks (those to which a pointer was found) are not shown. ==15156== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15156== ==15156== For lists of detected and suppressed errors, rerun with: -s ==15156== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)