==14829== Memcheck, a memory error detector
==14829== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14829== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14829== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info
==14829== Parent PID: 14632
==14829== 
==14829== 
==14829== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14829== Open file descriptor 10: /dev/shm/open_mpi.0000
==14829==    at 0x1359C536: __open_nocancel (open64_nocancel.c:39)
==14829==    by 0x13520BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14829==    by 0x1883A89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x1883AA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x18839C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x18839F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x18709159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x10BA30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BDA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0xFBA4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14829==    by 0xF24F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14829==    by 0xF24F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14829==    by 0x40327C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14829==    by 0x402C6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14829==    by 0x402F8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14829==    by 0x402F761: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14829==    by 0x402FE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14829==    by 0x402AB08: main (TestEllipticBoxDomainPdeModifier.cpp:18)
==14829== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14829== Open file descriptor 9:
==14829==    at 0x135AA96B: eventfd (syscall-template.S:120)
==14829==    by 0x1889A188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x18898395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x18898704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x188989F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x187FF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x187FF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x18709120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x10BA30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BDA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0xFBA4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14829==    by 0xF24F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14829==    by 0xF24F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14829==    by 0x40327C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14829==    by 0x402C6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14829==    by 0x402F8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14829==    by 0x402F761: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14829==    by 0x402FE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14829==    by 0x402AB08: main (TestEllipticBoxDomainPdeModifier.cpp:18)
==14829== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14829== Open file descriptor 8:
==14829==    at 0x1359B2BB: pipe2 (syscall-template.S:120)
==14829==    by 0x18899F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x1889C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x1889C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x188988AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x187FF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x187FF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x18709120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x10BA30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BDA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0xFBA4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14829==    by 0xF24F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14829==    by 0xF24F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14829==    by 0x40327C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14829==    by 0x402C6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14829==    by 0x402F8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14829==    by 0x402F761: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14829==    by 0x402FE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14829==    by 0x402AB08: main (TestEllipticBoxDomainPdeModifier.cpp:18)
==14829== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14829== Open file descriptor 7:
==14829==    at 0x1359B2BB: pipe2 (syscall-template.S:120)
==14829==    by 0x18899F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x1889C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x1889C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x188988AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x187FF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x187FF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x18709120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x10BA30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BDA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0xFBA4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14829==    by 0xF24F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14829==    by 0xF24F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14829==    by 0x40327C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14829==    by 0x402C6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14829==    by 0x402F8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14829==    by 0x402F761: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14829==    by 0x402FE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14829==    by 0x402AB08: main (TestEllipticBoxDomainPdeModifier.cpp:18)
==14829== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14829== Open file descriptor 4:
==14829==    at 0x135AB46B: epoll_create1 (syscall-template.S:120)
==14829==    by 0x1889C6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x188988AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14829==    by 0x187FF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x187FF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x18709120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14829==    by 0x10BA30E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA92C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BA018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0x10BDA627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14829==    by 0xFBA4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14829==    by 0xF24F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14829==    by 0xF24F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14829==    by 0x40327C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14829==    by 0x402C6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14829==    by 0x402F8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14829==    by 0x402F761: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14829==    by 0x402FE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14829==    by 0x402AB08: main (TestEllipticBoxDomainPdeModifier.cpp:18)
==14829== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14829== 
==14829== HEAP SUMMARY:
==14829==     in use at exit: 126,395 bytes in 898 blocks
==14829==   total heap usage: 5,213,759 allocs, 5,212,861 frees, 692,973,164 bytes allocated
==14829== 
==14829== LEAK SUMMARY:
==14829==    definitely lost: 0 bytes in 0 blocks
==14829==    indirectly lost: 0 bytes in 0 blocks
==14829==      possibly lost: 0 bytes in 0 blocks
==14829==    still reachable: 11,981 bytes in 45 blocks
==14829==         suppressed: 114,414 bytes in 853 blocks
==14829== Reachable blocks (those to which a pointer was found) are not shown.
==14829== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14829== 
==14829== For lists of detected and suppressed errors, rerun with: -s
==14829== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)