==29575== Memcheck, a memory error detector
==29575== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==29575== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==29575== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==29575== Parent PID: 14632
==29575== 
==29575== 
==29575== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==29575== Open file descriptor 10: /dev/shm/open_mpi.0000
==29575==    at 0xF9E2536: __open_nocancel (open64_nocancel.c:39)
==29575==    by 0xF966BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==29575==    by 0x163A989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x163A9A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x163A8C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x163A8F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x16278159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x11DDB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DD818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11E12627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x12A37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29575==    by 0xD2F02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29575==    by 0xD2F0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29575==    by 0x401B1D4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==29575==    by 0x4015EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29575==    by 0x401896E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29575==    by 0x4018792: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29575==    by 0x4018F3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29575==    by 0x4013EF8: main (TestRunningPottsBasedSimulationsTutorial.cpp:19)
==29575== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29575== Open file descriptor 9:
==29575==    at 0xF9F096B: eventfd (syscall-template.S:120)
==29575==    by 0x1640B188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x16409395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x16409704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x164099F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x1636E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x1636E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x16278120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x11DDB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DD818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11E12627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x12A37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29575==    by 0xD2F02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29575==    by 0xD2F0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29575==    by 0x401B1D4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==29575==    by 0x4015EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29575==    by 0x401896E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29575==    by 0x4018792: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29575==    by 0x4018F3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29575==    by 0x4013EF8: main (TestRunningPottsBasedSimulationsTutorial.cpp:19)
==29575== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29575== Open file descriptor 8:
==29575==    at 0xF9E12BB: pipe2 (syscall-template.S:120)
==29575==    by 0x1640AF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x1640D579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x1640D774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x164098AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x1636E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x1636E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x16278120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x11DDB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DD818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11E12627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x12A37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29575==    by 0xD2F02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29575==    by 0xD2F0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29575==    by 0x401B1D4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==29575==    by 0x4015EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29575==    by 0x401896E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29575==    by 0x4018792: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29575==    by 0x4018F3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29575==    by 0x4013EF8: main (TestRunningPottsBasedSimulationsTutorial.cpp:19)
==29575== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29575== Open file descriptor 7:
==29575==    at 0xF9E12BB: pipe2 (syscall-template.S:120)
==29575==    by 0x1640AF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x1640D579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x1640D774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x164098AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x1636E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x1636E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x16278120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x11DDB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DD818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11E12627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x12A37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29575==    by 0xD2F02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29575==    by 0xD2F0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29575==    by 0x401B1D4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==29575==    by 0x4015EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29575==    by 0x401896E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29575==    by 0x4018792: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29575==    by 0x4018F3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29575==    by 0x4013EF8: main (TestRunningPottsBasedSimulationsTutorial.cpp:19)
==29575== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29575== Open file descriptor 4:
==29575==    at 0xF9F146B: epoll_create1 (syscall-template.S:120)
==29575==    by 0x1640D6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x164098AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29575==    by 0x1636E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x1636E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x16278120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29575==    by 0x11DDB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DE12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11DD818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x11E12627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29575==    by 0x12A37446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29575==    by 0xD2F02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29575==    by 0xD2F0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29575==    by 0x401B1D4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==29575==    by 0x4015EC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29575==    by 0x401896E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29575==    by 0x4018792: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29575==    by 0x4018F3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29575==    by 0x4013EF8: main (TestRunningPottsBasedSimulationsTutorial.cpp:19)
==29575== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29575== 
==29575== HEAP SUMMARY:
==29575==     in use at exit: 127,971 bytes in 901 blocks
==29575==   total heap usage: 39,602,304 allocs, 39,601,403 frees, 2,763,563,959 bytes allocated
==29575== 
==29575== LEAK SUMMARY:
==29575==    definitely lost: 0 bytes in 0 blocks
==29575==    indirectly lost: 0 bytes in 0 blocks
==29575==      possibly lost: 0 bytes in 0 blocks
==29575==    still reachable: 12,109 bytes in 46 blocks
==29575==         suppressed: 115,862 bytes in 855 blocks
==29575== Reachable blocks (those to which a pointer was found) are not shown.
==29575== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==29575== 
==29575== For lists of detected and suppressed errors, rerun with: -s
==29575== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 35 from 35)