==15741== Memcheck, a memory error detector
==15741== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==15741== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==15741== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info
==15741== Parent PID: 14866
==15741== 
==15741== 
==15741== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==15741== Open file descriptor 10: /dev/shm/open_mpi.0000
==15741==    at 0x8D38536: __open_nocancel (open64_nocancel.c:39)
==15741==    by 0x8CBCBC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==15741==    by 0xFE1089E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFE10A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFE0FC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFE0FF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFCDF159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xAC7A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC802C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xACB1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0x9AEF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15741==    by 0x88FB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15741==    by 0x88FB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15741==    by 0x40139B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15741==    by 0x400E781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15741==    by 0x40116AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15741==    by 0x40114D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15741==    by 0x4011C7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15741==    by 0x400C7B8: main (TestNonlinearElasticityTools.cpp:19)
==15741== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15741== Open file descriptor 9:
==15741==    at 0x8D4696B: eventfd (syscall-template.S:120)
==15741==    by 0xFE70188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE6E395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE6E704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE6E9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFDD50D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFDD51E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFCDF120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xAC7A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC802C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xACB1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0x9AEF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15741==    by 0x88FB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15741==    by 0x88FB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15741==    by 0x40139B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15741==    by 0x400E781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15741==    by 0x40116AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15741==    by 0x40114D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15741==    by 0x4011C7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15741==    by 0x400C7B8: main (TestNonlinearElasticityTools.cpp:19)
==15741== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15741== Open file descriptor 8:
==15741==    at 0x8D372BB: pipe2 (syscall-template.S:120)
==15741==    by 0xFE6FF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE72579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE72774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE6E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFDD50D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFDD51E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFCDF120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xAC7A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC802C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xACB1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0x9AEF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15741==    by 0x88FB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15741==    by 0x88FB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15741==    by 0x40139B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15741==    by 0x400E781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15741==    by 0x40116AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15741==    by 0x40114D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15741==    by 0x4011C7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15741==    by 0x400C7B8: main (TestNonlinearElasticityTools.cpp:19)
==15741== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15741== Open file descriptor 7:
==15741==    at 0x8D372BB: pipe2 (syscall-template.S:120)
==15741==    by 0xFE6FF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE72579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE72774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE6E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFDD50D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFDD51E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFCDF120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xAC7A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC802C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xACB1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0x9AEF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15741==    by 0x88FB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15741==    by 0x88FB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15741==    by 0x40139B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15741==    by 0x400E781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15741==    by 0x40116AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15741==    by 0x40114D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15741==    by 0x4011C7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15741==    by 0x400C7B8: main (TestNonlinearElasticityTools.cpp:19)
==15741== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15741== Open file descriptor 6:
==15741==    at 0x8D4746B: epoll_create1 (syscall-template.S:120)
==15741==    by 0xFE726FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFE6E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15741==    by 0xFDD50D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFDD51E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xFCDF120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15741==    by 0xAC7A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC802C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xAC7718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0xACB1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15741==    by 0x9AEF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15741==    by 0x88FB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15741==    by 0x88FB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15741==    by 0x40139B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15741==    by 0x400E781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15741==    by 0x40116AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15741==    by 0x40114D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15741==    by 0x4011C7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15741==    by 0x400C7B8: main (TestNonlinearElasticityTools.cpp:19)
==15741== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15741== 
==15741== HEAP SUMMARY:
==15741==     in use at exit: 128,874 bytes in 933 blocks
==15741==   total heap usage: 37,693 allocs, 36,760 frees, 11,491,550 bytes allocated
==15741== 
==15741== LEAK SUMMARY:
==15741==    definitely lost: 0 bytes in 0 blocks
==15741==    indirectly lost: 0 bytes in 0 blocks
==15741==      possibly lost: 0 bytes in 0 blocks
==15741==    still reachable: 11,917 bytes in 44 blocks
==15741==         suppressed: 116,957 bytes in 889 blocks
==15741== Reachable blocks (those to which a pointer was found) are not shown.
==15741== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==15741== 
==15741== For lists of detected and suppressed errors, rerun with: -s
==15741== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)