==13803== Memcheck, a memory error detector ==13803== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13803== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13803== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionStatistics -malloc_debug -malloc_dump -memory_info ==13803== Parent PID: 13363 ==13803== ==13803== ==13803== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13803== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13803== at 0x14C46536: __open_nocancel (open64_nocancel.c:39) ==13803== by 0x14BCABC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13803== by 0x1A26D89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A26DA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A26CC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A26CF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A13C159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x143FF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x1440449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x144052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x143FC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x14436627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13803== by 0x143352D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13803== by 0x14335327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13803== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13803== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13803== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13803== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13803== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13803== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13803== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13803== Open file descriptor 9: ==13803== at 0x14C5496B: eventfd (syscall-template.S:120) ==13803== by 0x1A2CD188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CB395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CB704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CB9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2320D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A2321E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A13C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x143FF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x1440449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x144052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x143FC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x14436627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13803== by 0x143352D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13803== by 0x14335327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13803== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13803== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13803== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13803== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13803== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13803== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13803== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13803== Open file descriptor 8: ==13803== at 0x14C452BB: pipe2 (syscall-template.S:120) ==13803== by 0x1A2CCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2320D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A2321E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A13C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x143FF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x1440449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x144052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x143FC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x14436627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13803== by 0x143352D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13803== by 0x14335327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13803== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13803== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13803== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13803== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13803== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13803== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13803== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13803== Open file descriptor 7: ==13803== at 0x14C452BB: pipe2 (syscall-template.S:120) ==13803== by 0x1A2CCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2320D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A2321E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A13C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x143FF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x1440449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x144052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x143FC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x14436627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13803== by 0x143352D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13803== by 0x14335327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13803== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13803== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13803== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13803== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13803== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13803== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13803== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13803== Open file descriptor 4: ==13803== at 0x14C5546B: epoll_create1 (syscall-template.S:120) ==13803== by 0x1A2CF6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2CB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13803== by 0x1A2320D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A2321E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x1A13C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13803== by 0x143FF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x1440449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x144052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x143FC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x14436627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13803== by 0x6A1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13803== by 0x143352D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13803== by 0x14335327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13803== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13803== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13803== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13803== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13803== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13803== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13803== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13803== ==13803== HEAP SUMMARY: ==13803== in use at exit: 126,473 bytes in 902 blocks ==13803== total heap usage: 1,135,716 allocs, 1,134,814 frees, 76,546,032 bytes allocated ==13803== ==13803== LEAK SUMMARY: ==13803== definitely lost: 0 bytes in 0 blocks ==13803== indirectly lost: 0 bytes in 0 blocks ==13803== possibly lost: 0 bytes in 0 blocks ==13803== still reachable: 11,989 bytes in 45 blocks ==13803== suppressed: 114,484 bytes in 857 blocks ==13803== Reachable blocks (those to which a pointer was found) are not shown. ==13803== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13803== ==13803== For lists of detected and suppressed errors, rerun with: -s ==13803== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)