==40409== Memcheck, a memory error detector ==40409== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40409== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40409== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info ==40409== Parent PID: 24065 ==40409== ==40409== ==40409== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40409== Open file descriptor 12: ==40409== at 0x125FA0BD: pipe (pipe.c:29) ==40409== by 0x1B3BA07D: ??? ==40409== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40409== by 0x11F02418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40409== by 0x11E9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40409== by 0x6277D38: PetscInitialize (pinit.c:924) ==40409== by 0x11DE4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40409== by 0x11DE4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40409== by 0x2253B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40409== by 0x21CBDF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40409== by 0x2206BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40409== by 0x2205B7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40409== by 0x220BCB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40409== by 0x21B3D5: main (TestCryptSimulation1d.cpp:18) ==40409== ==40409== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40409== at 0x125FEA5C: __open_nocancel (open64_nocancel.c:39) ==40409== by 0x12582B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40409== by 0x611C822: ??? ==40409== by 0x611C96F: ??? ==40409== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40409== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40409== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40409== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40409== by 0x11F02418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40409== by 0x11E9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40409== by 0x6277D38: PetscInitialize (pinit.c:924) ==40409== by 0x11DE4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40409== by 0x11DE4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40409== by 0x2253B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40409== by 0x21CBDF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40409== by 0x2206BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40409== by 0x2205B7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40409== by 0x220BCB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40409== by 0x21B3D5: main (TestCryptSimulation1d.cpp:18) ==40409== ==40409== Open file descriptor 145: ==40409== ==40409== ==40409== Open file descriptor 142: ==40409== ==40409== ==40409== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt ==40409== ==40409== ==40409== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40409== ==40409== ==40409== ==40409== HEAP SUMMARY: ==40409== in use at exit: 35,142 bytes in 286 blocks ==40409== total heap usage: 4,111,489 allocs, 4,111,203 frees, 643,174,859 bytes allocated ==40409== ==40409== LEAK SUMMARY: ==40409== definitely lost: 0 bytes in 0 blocks ==40409== indirectly lost: 0 bytes in 0 blocks ==40409== possibly lost: 0 bytes in 0 blocks ==40409== still reachable: 56 bytes in 3 blocks ==40409== suppressed: 35,086 bytes in 283 blocks ==40409== Reachable blocks (those to which a pointer was found) are not shown. ==40409== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40409== ==40409== For lists of detected and suppressed errors, rerun with: -s ==40409== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)