==40387== Memcheck, a memory error detector ==40387== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40387== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40387== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info ==40387== Parent PID: 23939 ==40387== ==40387== ==40387== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40387== Open file descriptor 12: ==40387== at 0x125FA0BD: pipe (pipe.c:29) ==40387== by 0x1B3BA07D: ??? ==40387== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40387== by 0x11F02418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40387== by 0x11E9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40387== by 0x6277D38: PetscInitialize (pinit.c:924) ==40387== by 0x11DE4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40387== by 0x11DE4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40387== by 0x2253B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40387== by 0x21CBDF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40387== by 0x2206BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40387== by 0x2205B7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40387== by 0x220BCB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40387== by 0x21B3D5: main (TestCryptSimulation1d.cpp:18) ==40387== ==40387== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40387== at 0x125FEA5C: __open_nocancel (open64_nocancel.c:39) ==40387== by 0x12582B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40387== by 0x611C822: ??? ==40387== by 0x611C96F: ??? ==40387== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40387== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40387== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40387== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40387== by 0x11F02418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40387== by 0x11E9BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40387== by 0x6277D38: PetscInitialize (pinit.c:924) ==40387== by 0x11DE4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40387== by 0x11DE4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40387== by 0x2253B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40387== by 0x21CBDF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40387== by 0x2206BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40387== by 0x2205B7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40387== by 0x220BCB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40387== by 0x21B3D5: main (TestCryptSimulation1d.cpp:18) ==40387== ==40387== Open file descriptor 145: ==40387== ==40387== ==40387== Open file descriptor 142: ==40387== ==40387== ==40387== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt ==40387== ==40387== ==40387== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40387== ==40387== ==40387== ==40387== HEAP SUMMARY: ==40387== in use at exit: 16,977 bytes in 69 blocks ==40387== total heap usage: 4,111,082 allocs, 4,111,013 frees, 642,090,279 bytes allocated ==40387== ==40387== LEAK SUMMARY: ==40387== definitely lost: 0 bytes in 0 blocks ==40387== indirectly lost: 0 bytes in 0 blocks ==40387== possibly lost: 0 bytes in 0 blocks ==40387== still reachable: 56 bytes in 3 blocks ==40387== suppressed: 16,921 bytes in 66 blocks ==40387== Reachable blocks (those to which a pointer was found) are not shown. ==40387== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40387== ==40387== For lists of detected and suppressed errors, rerun with: -s ==40387== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)