==40889== Memcheck, a memory error detector ==40889== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40889== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40889== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainDistributedMesh -malloc_debug -malloc_dump -memory_info ==40889== Parent PID: 23978 ==40889== ==40889== ==40889== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40889== Open file descriptor 12: ==40889== at 0xBC3C0BD: pipe (pipe.c:29) ==40889== by 0x1435E07D: ??? ==40889== by 0xFB1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40889== by 0xB544418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40889== by 0xB4DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40889== by 0x8205D38: PetscInitialize (pinit.c:924) ==40889== by 0xB3E9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40889== by 0xB3E9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40889== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40889== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40889== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40889== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40889== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40889== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==40889== ==40889== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40889== at 0xBC40A5C: __open_nocancel (open64_nocancel.c:39) ==40889== by 0xBBC4B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40889== by 0xB421822: ??? ==40889== by 0xB42196F: ??? ==40889== by 0xFBC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40889== by 0xFBC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40889== by 0xFB79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40889== by 0xFB1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40889== by 0xB544418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40889== by 0xB4DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40889== by 0x8205D38: PetscInitialize (pinit.c:924) ==40889== by 0xB3E9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40889== by 0xB3E9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40889== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40889== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40889== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40889== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40889== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40889== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) ==40889== ==40889== Open file descriptor 145: ==40889== ==40889== ==40889== Open file descriptor 142: ==40889== ==40889== ==40889== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainDistributedMesh_valgrind.txt ==40889== ==40889== ==40889== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40889== ==40889== ==40889== ==40889== HEAP SUMMARY: ==40889== in use at exit: 35,663 bytes in 299 blocks ==40889== total heap usage: 412,064 allocs, 411,765 frees, 106,309,181 bytes allocated ==40889== ==40889== LEAK SUMMARY: ==40889== definitely lost: 0 bytes in 0 blocks ==40889== indirectly lost: 0 bytes in 0 blocks ==40889== possibly lost: 0 bytes in 0 blocks ==40889== still reachable: 24 bytes in 2 blocks ==40889== suppressed: 35,639 bytes in 297 blocks ==40889== Reachable blocks (those to which a pointer was found) are not shown. ==40889== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40889== ==40889== For lists of detected and suppressed errors, rerun with: -s ==40889== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 52 from 35)