==40904== Memcheck, a memory error detector ==40904== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40904== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40904== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithBathProblem -malloc_debug -malloc_dump -memory_info ==40904== Parent PID: 23978 ==40904== ==40904== ==40904== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40904== Open file descriptor 12: ==40904== at 0xAC9A0BD: pipe (pipe.c:29) ==40904== by 0x1435E07D: ??? ==40904== by 0xD99D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40904== by 0xB068418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40904== by 0xB001D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40904== by 0xB543D38: PetscInitialize (pinit.c:924) ==40904== by 0xA497E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40904== by 0xA497EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40904== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40904== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40904== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40904== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40904== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40904== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) ==40904== ==40904== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40904== at 0xAC9EA5C: __open_nocancel (open64_nocancel.c:39) ==40904== by 0xAC22B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40904== by 0xA4CF822: ??? ==40904== by 0xA4CF96F: ??? ==40904== by 0xDA426DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40904== by 0xDA42938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40904== by 0xD9F8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40904== by 0xD99D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40904== by 0xB068418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40904== by 0xB001D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40904== by 0xB543D38: PetscInitialize (pinit.c:924) ==40904== by 0xA497E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40904== by 0xA497EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40904== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40904== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40904== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40904== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40904== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40904== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) ==40904== ==40904== Open file descriptor 145: ==40904== ==40904== ==40904== Open file descriptor 142: ==40904== ==40904== ==40904== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithBathProblem_valgrind.txt ==40904== ==40904== ==40904== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40904== ==40904== ==40904== ==40904== HEAP SUMMARY: ==40904== in use at exit: 35,590 bytes in 295 blocks ==40904== total heap usage: 1,378,089 allocs, 1,377,794 frees, 656,485,858 bytes allocated ==40904== ==40904== LEAK SUMMARY: ==40904== definitely lost: 0 bytes in 0 blocks ==40904== indirectly lost: 0 bytes in 0 blocks ==40904== possibly lost: 0 bytes in 0 blocks ==40904== still reachable: 24 bytes in 2 blocks ==40904== suppressed: 35,566 bytes in 293 blocks ==40904== Reachable blocks (those to which a pointer was found) are not shown. ==40904== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40904== ==40904== For lists of detected and suppressed errors, rerun with: -s ==40904== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 66 from 31)