==13688== Memcheck, a memory error detector ==13688== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13688== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13688== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==13688== Parent PID: 13258 ==13688== ==13688== ==13688== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13688== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13688== at 0x15010536: __open_nocancel (open64_nocancel.c:39) ==13688== by 0x14F94BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13688== by 0x1A58289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A582A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A581C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A581F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A451159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x147C70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147C418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147FE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13688== by 0x146FF2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13688== by 0x146FF327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13688== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13688== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13688== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13688== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13688== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13688== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13688== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13688== Open file descriptor 9: ==13688== at 0x1501E96B: eventfd (syscall-template.S:120) ==13688== by 0x1A5E2188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E0395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E0704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E09F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5470D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A5471E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A451120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x147C70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147C418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147FE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13688== by 0x146FF2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13688== by 0x146FF327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13688== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13688== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13688== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13688== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13688== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13688== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13688== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13688== Open file descriptor 8: ==13688== at 0x1500F2BB: pipe2 (syscall-template.S:120) ==13688== by 0x1A5E1F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E4579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E4774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E08AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5470D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A5471E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A451120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x147C70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147C418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147FE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13688== by 0x146FF2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13688== by 0x146FF327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13688== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13688== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13688== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13688== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13688== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13688== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13688== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13688== Open file descriptor 7: ==13688== at 0x1500F2BB: pipe2 (syscall-template.S:120) ==13688== by 0x1A5E1F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E4579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E4774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E08AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5470D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A5471E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A451120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x147C70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147C418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147FE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13688== by 0x146FF2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13688== by 0x146FF327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13688== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13688== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13688== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13688== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13688== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13688== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13688== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13688== Open file descriptor 6: ==13688== at 0x1501F46B: epoll_create1 (syscall-template.S:120) ==13688== by 0x1A5E46FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5E08AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13688== by 0x1A5470D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A5471E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x1A451120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13688== by 0x147C70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147CD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147C418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x147FE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13688== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13688== by 0x146FF2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13688== by 0x146FF327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13688== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13688== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13688== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13688== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13688== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13688== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13688== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13688== ==13688== HEAP SUMMARY: ==13688== in use at exit: 126,358 bytes in 897 blocks ==13688== total heap usage: 1,799,842 allocs, 1,798,945 frees, 118,241,142 bytes allocated ==13688== ==13688== LEAK SUMMARY: ==13688== definitely lost: 0 bytes in 0 blocks ==13688== indirectly lost: 0 bytes in 0 blocks ==13688== possibly lost: 0 bytes in 0 blocks ==13688== still reachable: 11,957 bytes in 44 blocks ==13688== suppressed: 114,401 bytes in 853 blocks ==13688== Reachable blocks (those to which a pointer was found) are not shown. ==13688== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13688== ==13688== For lists of detected and suppressed errors, rerun with: -s ==13688== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)