==13356== Memcheck, a memory error detector ==13356== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13356== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13356== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestShovingCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info ==13356== Parent PID: 13239 ==13356== ==13356== ==13356== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13356== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13356== at 0x13233536: __open_nocancel (open64_nocancel.c:39) ==13356== by 0x131B7BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13356== by 0x1863A89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x1863AA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x18639C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x18639F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x18509159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x12ACE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12ACB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12B05627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13356== by 0x12A042D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13356== by 0x12A04327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13356== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13356== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13356== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13356== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13356== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13356== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==13356== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13356== Open file descriptor 9: ==13356== at 0x1324196B: eventfd (syscall-template.S:120) ==13356== by 0x1869A188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x18698395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x18698704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x186989F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x185FF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x185FF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x18509120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x12ACE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12ACB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12B05627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13356== by 0x12A042D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13356== by 0x12A04327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13356== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13356== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13356== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13356== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13356== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13356== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==13356== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13356== Open file descriptor 8: ==13356== at 0x132322BB: pipe2 (syscall-template.S:120) ==13356== by 0x18699F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x1869C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x1869C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x186988AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x185FF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x185FF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x18509120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x12ACE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12ACB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12B05627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13356== by 0x12A042D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13356== by 0x12A04327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13356== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13356== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13356== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13356== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13356== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13356== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==13356== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13356== Open file descriptor 7: ==13356== at 0x132322BB: pipe2 (syscall-template.S:120) ==13356== by 0x18699F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x1869C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x1869C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x186988AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x185FF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x185FF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x18509120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x12ACE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12ACB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12B05627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13356== by 0x12A042D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13356== by 0x12A04327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13356== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13356== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13356== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13356== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13356== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13356== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==13356== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13356== Open file descriptor 6: ==13356== at 0x1324246B: epoll_create1 (syscall-template.S:120) ==13356== by 0x1869C6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x186988AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13356== by 0x185FF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x185FF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x18509120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13356== by 0x12ACE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12AD42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12ACB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x12B05627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13356== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13356== by 0x12A042D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13356== by 0x12A04327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13356== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13356== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13356== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13356== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13356== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13356== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==13356== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13356== ==13356== HEAP SUMMARY: ==13356== in use at exit: 126,491 bytes in 903 blocks ==13356== total heap usage: 38,046 allocs, 37,143 frees, 11,213,078 bytes allocated ==13356== ==13356== LEAK SUMMARY: ==13356== definitely lost: 0 bytes in 0 blocks ==13356== indirectly lost: 0 bytes in 0 blocks ==13356== possibly lost: 0 bytes in 0 blocks ==13356== still reachable: 12,005 bytes in 46 blocks ==13356== suppressed: 114,486 bytes in 857 blocks ==13356== Reachable blocks (those to which a pointer was found) are not shown. ==13356== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13356== ==13356== For lists of detected and suppressed errors, rerun with: -s ==13356== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)