==13447== Memcheck, a memory error detector ==13447== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13447== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13447== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==13447== Parent PID: 12943 ==13447== ==13447== ==13447== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13447== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13447== at 0x14CFF536: __open_nocancel (open64_nocancel.c:39) ==13447== by 0x14C83BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13447== by 0x1A27189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A271A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A270C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A270F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A140159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x144B60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144B318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144ED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13447== by 0x143EE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13447== by 0x143EE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13447== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13447== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13447== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13447== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13447== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13447== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13447== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13447== Open file descriptor 9: ==13447== at 0x14D0D96B: eventfd (syscall-template.S:120) ==13447== by 0x1A2D1188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2CF395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2CF704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2CF9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2360D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A2361E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A140120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x144B60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144B318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144ED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13447== by 0x143EE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13447== by 0x143EE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13447== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13447== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13447== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13447== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13447== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13447== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13447== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13447== Open file descriptor 8: ==13447== at 0x14CFE2BB: pipe2 (syscall-template.S:120) ==13447== by 0x1A2D0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2D3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2D3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2CF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2360D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A2361E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A140120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x144B60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144B318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144ED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13447== by 0x143EE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13447== by 0x143EE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13447== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13447== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13447== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13447== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13447== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13447== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13447== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13447== Open file descriptor 7: ==13447== at 0x14CFE2BB: pipe2 (syscall-template.S:120) ==13447== by 0x1A2D0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2D3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2D3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2CF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2360D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A2361E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A140120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x144B60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144B318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144ED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13447== by 0x143EE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13447== by 0x143EE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13447== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13447== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13447== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13447== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13447== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13447== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13447== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13447== Open file descriptor 6: ==13447== at 0x14D0E46B: epoll_create1 (syscall-template.S:120) ==13447== by 0x1A2D36FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2CF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13447== by 0x1A2360D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A2361E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x1A140120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13447== by 0x144B60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144BC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144B318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x144ED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13447== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13447== by 0x143EE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13447== by 0x143EE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13447== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13447== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13447== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13447== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13447== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13447== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13447== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13447== ==13447== HEAP SUMMARY: ==13447== in use at exit: 104,572 bytes in 636 blocks ==13447== total heap usage: 1,798,980 allocs, 1,798,344 frees, 116,238,017 bytes allocated ==13447== ==13447== LEAK SUMMARY: ==13447== definitely lost: 0 bytes in 0 blocks ==13447== indirectly lost: 0 bytes in 0 blocks ==13447== possibly lost: 0 bytes in 0 blocks ==13447== still reachable: 11,957 bytes in 44 blocks ==13447== suppressed: 92,615 bytes in 592 blocks ==13447== Reachable blocks (those to which a pointer was found) are not shown. ==13447== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13447== ==13447== For lists of detected and suppressed errors, rerun with: -s ==13447== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)