==14687== Memcheck, a memory error detector
==14687== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14687== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14687== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info
==14687== Parent PID: 14684
==14687== 
==14687== 
==14687== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14687== Open file descriptor 10: /dev/shm/open_mpi.0001
==14687==    at 0xF378536: __open_nocancel (open64_nocancel.c:39)
==14687==    by 0xF2FCBC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14687==    by 0x169B789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x169B7A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x169B6C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x169B6F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x16886159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0xEC130E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC192C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC4A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xDBF1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14687==    by 0xD3022D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14687==    by 0xD302327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14687==    by 0x4010A0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14687==    by 0x400C143: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14687==    by 0x400E4AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14687==    by 0x400E34A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14687==    by 0x400E9F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14687==    by 0x400A932: main (TestCellSrn.cpp:18)
==14687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14687== Open file descriptor 9:
==14687==    at 0xF38696B: eventfd (syscall-template.S:120)
==14687==    by 0x16A17188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A15395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A15704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A159F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x1697C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x1697C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x16886120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0xEC130E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC192C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC4A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xDBF1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14687==    by 0xD3022D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14687==    by 0xD302327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14687==    by 0x4010A0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14687==    by 0x400C143: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14687==    by 0x400E4AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14687==    by 0x400E34A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14687==    by 0x400E9F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14687==    by 0x400A932: main (TestCellSrn.cpp:18)
==14687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14687== Open file descriptor 8:
==14687==    at 0xF3772BB: pipe2 (syscall-template.S:120)
==14687==    by 0x16A16F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A19579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A19774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A158AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x1697C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x1697C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x16886120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0xEC130E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC192C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC4A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xDBF1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14687==    by 0xD3022D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14687==    by 0xD302327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14687==    by 0x4010A0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14687==    by 0x400C143: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14687==    by 0x400E4AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14687==    by 0x400E34A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14687==    by 0x400E9F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14687==    by 0x400A932: main (TestCellSrn.cpp:18)
==14687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14687== Open file descriptor 7:
==14687==    at 0xF3772BB: pipe2 (syscall-template.S:120)
==14687==    by 0x16A16F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A19579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A19774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A158AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x1697C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x1697C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x16886120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0xEC130E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC192C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC4A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xDBF1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14687==    by 0xD3022D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14687==    by 0xD302327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14687==    by 0x4010A0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14687==    by 0x400C143: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14687==    by 0x400E4AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14687==    by 0x400E34A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14687==    by 0x400E9F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14687==    by 0x400A932: main (TestCellSrn.cpp:18)
==14687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14687== Open file descriptor 6:
==14687==    at 0xF38746B: epoll_create1 (syscall-template.S:120)
==14687==    by 0x16A196FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x16A158AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14687==    by 0x1697C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x1697C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0x16886120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14687==    by 0xEC130E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC192C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC1018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xEC4A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14687==    by 0xDBF1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14687==    by 0xD3022D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14687==    by 0xD302327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14687==    by 0x4010A0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14687==    by 0x400C143: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14687==    by 0x400E4AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14687==    by 0x400E34A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14687==    by 0x400E9F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14687==    by 0x400A932: main (TestCellSrn.cpp:18)
==14687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14687== 
==14687== HEAP SUMMARY:
==14687==     in use at exit: 126,512 bytes in 903 blocks
==14687==   total heap usage: 43,379 allocs, 42,476 frees, 11,375,889 bytes allocated
==14687== 
==14687== LEAK SUMMARY:
==14687==    definitely lost: 0 bytes in 0 blocks
==14687==    indirectly lost: 0 bytes in 0 blocks
==14687==      possibly lost: 0 bytes in 0 blocks
==14687==    still reachable: 12,045 bytes in 46 blocks
==14687==         suppressed: 114,467 bytes in 857 blocks
==14687== Reachable blocks (those to which a pointer was found) are not shown.
==14687== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14687== 
==14687== For lists of detected and suppressed errors, rerun with: -s
==14687== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)