==12946== Memcheck, a memory error detector
==12946== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==12946== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==12946== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info
==12946== Parent PID: 12806
==12946== 
==12946== 
==12946== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==12946== Open file descriptor 10: /dev/shm/open_mpi.0000
==12946==    at 0x1319E536: __open_nocancel (open64_nocancel.c:39)
==12946==    by 0x13122BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==12946==    by 0x17E9589E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17E95A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17E94C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17E94F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17D64159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x13A8D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A9249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A932C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A8A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13AC4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x146A4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12946==    by 0x12C7F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12946==    by 0x12C7F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12946==    by 0x412A634: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12946==    by 0x411F871: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12946==    by 0x41247DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12946==    by 0x4124602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12946==    by 0x4124DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12946==    by 0x411D898: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19)
==12946== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12946== Open file descriptor 9:
==12946==    at 0x131AC96B: eventfd (syscall-template.S:120)
==12946==    by 0x17EF5188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF3395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF3704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF39F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17E5A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17E5A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17D64120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x13A8D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A9249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A932C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A8A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13AC4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x146A4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12946==    by 0x12C7F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12946==    by 0x12C7F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12946==    by 0x412A634: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12946==    by 0x411F871: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12946==    by 0x41247DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12946==    by 0x4124602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12946==    by 0x4124DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12946==    by 0x411D898: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19)
==12946== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12946== Open file descriptor 8:
==12946==    at 0x1319D2BB: pipe2 (syscall-template.S:120)
==12946==    by 0x17EF4F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF7579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF7774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF38AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17E5A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17E5A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17D64120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x13A8D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A9249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A932C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A8A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13AC4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x146A4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12946==    by 0x12C7F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12946==    by 0x12C7F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12946==    by 0x412A634: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12946==    by 0x411F871: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12946==    by 0x41247DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12946==    by 0x4124602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12946==    by 0x4124DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12946==    by 0x411D898: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19)
==12946== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12946== Open file descriptor 7:
==12946==    at 0x1319D2BB: pipe2 (syscall-template.S:120)
==12946==    by 0x17EF4F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF7579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF7774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF38AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17E5A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17E5A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17D64120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x13A8D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A9249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A932C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A8A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13AC4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x146A4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12946==    by 0x12C7F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12946==    by 0x12C7F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12946==    by 0x412A634: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12946==    by 0x411F871: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12946==    by 0x41247DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12946==    by 0x4124602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12946==    by 0x4124DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12946==    by 0x411D898: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19)
==12946== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12946== Open file descriptor 4:
==12946==    at 0x131AD46B: epoll_create1 (syscall-template.S:120)
==12946==    by 0x17EF76FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17EF38AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12946==    by 0x17E5A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17E5A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x17D64120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12946==    by 0x13A8D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A9249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A932C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13A8A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x13AC4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12946==    by 0x146A4446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12946==    by 0x12C7F2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12946==    by 0x12C7F327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12946==    by 0x412A634: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12946==    by 0x411F871: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12946==    by 0x41247DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12946==    by 0x4124602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12946==    by 0x4124DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12946==    by 0x411D898: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19)
==12946== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12946== 
==12946== HEAP SUMMARY:
==12946==     in use at exit: 128,893 bytes in 930 blocks
==12946==   total heap usage: 6,344,360 allocs, 6,343,430 frees, 757,441,848 bytes allocated
==12946== 
==12946== LEAK SUMMARY:
==12946==    definitely lost: 0 bytes in 0 blocks
==12946==    indirectly lost: 0 bytes in 0 blocks
==12946==      possibly lost: 0 bytes in 0 blocks
==12946==    still reachable: 11,989 bytes in 45 blocks
==12946==         suppressed: 116,904 bytes in 885 blocks
==12946== Reachable blocks (those to which a pointer was found) are not shown.
==12946== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==12946== 
==12946== For lists of detected and suppressed errors, rerun with: -s
==12946== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)