==12885== Memcheck, a memory error detector
==12885== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==12885== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==12885== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info
==12885== Parent PID: 12806
==12885== 
==12885== 
==12885== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==12885== Open file descriptor 10: /dev/shm/open_mpi.0000
==12885==    at 0x10EE9536: __open_nocancel (open64_nocancel.c:39)
==12885==    by 0x10E6DBC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==12885==    by 0x1831A89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x1831AA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x18319C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x18319F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x181E9159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x107820E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1078749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107882C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1077F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107B9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x6A8C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12885==    by 0x106BA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12885==    by 0x106BA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12885==    by 0x401E477: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12885==    by 0x40195D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12885==    by 0x401BCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12885==    by 0x401BB9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12885==    by 0x401C247: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12885==    by 0x4017DC2: main (TestWntCellCycleOdeSystem.cpp:18)
==12885== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12885== Open file descriptor 9:
==12885==    at 0x10EF796B: eventfd (syscall-template.S:120)
==12885==    by 0x1837A188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x18378395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x18378704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x183789F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x182DF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x182DF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x181E9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x107820E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1078749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107882C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1077F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107B9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x6A8C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12885==    by 0x106BA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12885==    by 0x106BA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12885==    by 0x401E477: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12885==    by 0x40195D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12885==    by 0x401BCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12885==    by 0x401BB9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12885==    by 0x401C247: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12885==    by 0x4017DC2: main (TestWntCellCycleOdeSystem.cpp:18)
==12885== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12885== Open file descriptor 8:
==12885==    at 0x10EE82BB: pipe2 (syscall-template.S:120)
==12885==    by 0x18379F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x1837C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x1837C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x183788AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x182DF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x182DF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x181E9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x107820E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1078749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107882C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1077F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107B9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x6A8C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12885==    by 0x106BA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12885==    by 0x106BA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12885==    by 0x401E477: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12885==    by 0x40195D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12885==    by 0x401BCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12885==    by 0x401BB9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12885==    by 0x401C247: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12885==    by 0x4017DC2: main (TestWntCellCycleOdeSystem.cpp:18)
==12885== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12885== Open file descriptor 7:
==12885==    at 0x10EE82BB: pipe2 (syscall-template.S:120)
==12885==    by 0x18379F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x1837C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x1837C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x183788AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x182DF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x182DF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x181E9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x107820E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1078749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107882C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1077F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107B9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x6A8C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12885==    by 0x106BA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12885==    by 0x106BA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12885==    by 0x401E477: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12885==    by 0x40195D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12885==    by 0x401BCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12885==    by 0x401BB9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12885==    by 0x401C247: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12885==    by 0x4017DC2: main (TestWntCellCycleOdeSystem.cpp:18)
==12885== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12885== Open file descriptor 6:
==12885==    at 0x10EF846B: epoll_create1 (syscall-template.S:120)
==12885==    by 0x1837C6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x183788AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12885==    by 0x182DF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x182DF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x181E9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12885==    by 0x107820E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1078749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107882C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x1077F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x107B9627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12885==    by 0x6A8C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12885==    by 0x106BA2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12885==    by 0x106BA327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12885==    by 0x401E477: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12885==    by 0x40195D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12885==    by 0x401BCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12885==    by 0x401BB9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12885==    by 0x401C247: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12885==    by 0x4017DC2: main (TestWntCellCycleOdeSystem.cpp:18)
==12885== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12885== 
==12885== HEAP SUMMARY:
==12885==     in use at exit: 128,911 bytes in 933 blocks
==12885==   total heap usage: 165,502 allocs, 164,569 frees, 91,955,040 bytes allocated
==12885== 
==12885== LEAK SUMMARY:
==12885==    definitely lost: 0 bytes in 0 blocks
==12885==    indirectly lost: 0 bytes in 0 blocks
==12885==      possibly lost: 0 bytes in 0 blocks
==12885==    still reachable: 11,957 bytes in 44 blocks
==12885==         suppressed: 116,954 bytes in 889 blocks
==12885== Reachable blocks (those to which a pointer was found) are not shown.
==12885== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==12885== 
==12885== For lists of detected and suppressed errors, rerun with: -s
==12885== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)