==13900== Memcheck, a memory error detector ==13900== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13900== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13900== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info ==13900== Parent PID: 13808 ==13900== ==13900== ==13900== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13900== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13900== at 0x14B1A536: __open_nocancel (open64_nocancel.c:39) ==13900== by 0x14A9EBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13900== by 0x1A1DE89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A1DEA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A1DDC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A1DDF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A0AD159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x143B50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143B218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143EC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13900== by 0x142EC89B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13900== by 0x142EC8E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13900== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13900== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13900== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13900== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13900== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13900== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13900== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13900== Open file descriptor 9: ==13900== at 0x14B2896B: eventfd (syscall-template.S:120) ==13900== by 0x1A23E188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A23C395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A23C704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A23C9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A1A30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A1A31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A0AD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x143B50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143B218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143EC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13900== by 0x142EC89B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13900== by 0x142EC8E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13900== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13900== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13900== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13900== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13900== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13900== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13900== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13900== Open file descriptor 8: ==13900== at 0x14B192BB: pipe2 (syscall-template.S:120) ==13900== by 0x1A23DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A240579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A240774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A23C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A1A30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A1A31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A0AD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x143B50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143B218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143EC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13900== by 0x142EC89B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13900== by 0x142EC8E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13900== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13900== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13900== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13900== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13900== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13900== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13900== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13900== Open file descriptor 7: ==13900== at 0x14B192BB: pipe2 (syscall-template.S:120) ==13900== by 0x1A23DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A240579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A240774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A23C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A1A30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A1A31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A0AD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x143B50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143B218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143EC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13900== by 0x142EC89B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13900== by 0x142EC8E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13900== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13900== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13900== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13900== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13900== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13900== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13900== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13900== Open file descriptor 6: ==13900== at 0x14B2946B: epoll_create1 (syscall-template.S:120) ==13900== by 0x1A2406FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A23C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13900== by 0x1A1A30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A1A31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x1A0AD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13900== by 0x143B50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143BB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143B218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x143EC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13900== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13900== by 0x142EC89B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13900== by 0x142EC8E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13900== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13900== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13900== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13900== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13900== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13900== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13900== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13900== ==13900== HEAP SUMMARY: ==13900== in use at exit: 126,482 bytes in 903 blocks ==13900== total heap usage: 36,720 allocs, 35,817 frees, 11,361,849 bytes allocated ==13900== ==13900== LEAK SUMMARY: ==13900== definitely lost: 0 bytes in 0 blocks ==13900== indirectly lost: 0 bytes in 0 blocks ==13900== possibly lost: 0 bytes in 0 blocks ==13900== still reachable: 12,005 bytes in 46 blocks ==13900== suppressed: 114,477 bytes in 857 blocks ==13900== Reachable blocks (those to which a pointer was found) are not shown. ==13900== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13900== ==13900== For lists of detected and suppressed errors, rerun with: -s ==13900== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)