==15461== Memcheck, a memory error detector ==15461== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15461== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15461== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info ==15461== Parent PID: 15423 ==15461== ==15461== ==15461== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15461== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15461== at 0x4D82536: __open_nocancel (open64_nocancel.c:39) ==15461== by 0x4D06BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15461== by 0x719C89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x719CA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x719BC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x719BF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x706B159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15461== by 0x48F7052: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==15461== by 0x48F8CB6: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==15461== by 0x400B065: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15461== by 0x400B454: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15461== by 0x400651A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15461== by 0x4009306: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15461== by 0x40091D7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15461== by 0x4009069: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15461== by 0x4008ECE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15461== by 0x400957B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15461== by 0x40054D2: main (TestExecutableSupport.cpp:18) ==15461== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15461== Open file descriptor 9: ==15461== at 0x4D9096B: eventfd (syscall-template.S:120) ==15461== by 0x71FC188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FA395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FA704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FA9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71610D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x71611E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x706B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15461== by 0x48F7052: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==15461== by 0x48F8CB6: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==15461== by 0x400B065: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15461== by 0x400B454: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15461== by 0x400651A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15461== by 0x4009306: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15461== by 0x40091D7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15461== by 0x4009069: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15461== by 0x4008ECE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15461== by 0x400957B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15461== by 0x40054D2: main (TestExecutableSupport.cpp:18) ==15461== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15461== Open file descriptor 8: ==15461== at 0x4D812BB: pipe2 (syscall-template.S:120) ==15461== by 0x71FBF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FE579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FE774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71610D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x71611E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x706B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15461== by 0x48F7052: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==15461== by 0x48F8CB6: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==15461== by 0x400B065: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15461== by 0x400B454: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15461== by 0x400651A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15461== by 0x4009306: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15461== by 0x40091D7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15461== by 0x4009069: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15461== by 0x4008ECE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15461== by 0x400957B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15461== by 0x40054D2: main (TestExecutableSupport.cpp:18) ==15461== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15461== Open file descriptor 7: ==15461== at 0x4D812BB: pipe2 (syscall-template.S:120) ==15461== by 0x71FBF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FE579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FE774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71610D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x71611E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x706B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15461== by 0x48F7052: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==15461== by 0x48F8CB6: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==15461== by 0x400B065: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15461== by 0x400B454: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15461== by 0x400651A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15461== by 0x4009306: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15461== by 0x40091D7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15461== by 0x4009069: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15461== by 0x4008ECE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15461== by 0x400957B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15461== by 0x40054D2: main (TestExecutableSupport.cpp:18) ==15461== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15461== Open file descriptor 5: ==15461== at 0x4D9146B: epoll_create1 (syscall-template.S:120) ==15461== by 0x71FE6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71FA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15461== by 0x71610D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x71611E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x706B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15461== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15461== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15461== by 0x48F7052: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==15461== by 0x48F8CB6: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==15461== by 0x400B065: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15461== by 0x400B454: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15461== by 0x400651A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15461== by 0x4009306: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15461== by 0x40091D7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15461== by 0x4009069: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15461== by 0x4008ECE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15461== by 0x400957B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15461== by 0x40054D2: main (TestExecutableSupport.cpp:18) ==15461== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15461== ==15461== HEAP SUMMARY: ==15461== in use at exit: 127,023 bytes in 929 blocks ==15461== total heap usage: 25,333 allocs, 24,404 frees, 10,245,995 bytes allocated ==15461== ==15461== LEAK SUMMARY: ==15461== definitely lost: 0 bytes in 0 blocks ==15461== indirectly lost: 0 bytes in 0 blocks ==15461== possibly lost: 0 bytes in 0 blocks ==15461== still reachable: 10,073 bytes in 40 blocks ==15461== suppressed: 116,950 bytes in 889 blocks ==15461== Reachable blocks (those to which a pointer was found) are not shown. ==15461== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15461== ==15461== For lists of detected and suppressed errors, rerun with: -s ==15461== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)