==26967== Memcheck, a memory error detector
==26967== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==26967== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==26967== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVolumeTrackingModifier -malloc_debug -malloc_dump -memory_info
==26967== Parent PID: 15496
==26967== 
==26967== 
==26967== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==26967== Open file descriptor 10: /dev/shm/open_mpi.0000
==26967==    at 0x117C0536: __open_nocancel (open64_nocancel.c:39)
==26967==    by 0x11744BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==26967==    by 0x1659789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x16597A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x16596C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x16596F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x16466159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x1200C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1201149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x120122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1200918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12043627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12C23446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26967==    by 0xF0892D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26967==    by 0xF089327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26967==    by 0x40F7F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26967==    by 0x40EF7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26967==    by 0x40F35CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26967==    by 0x40F3461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26967==    by 0x40F3B5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26967==    by 0x40EDBF8: main (TestVolumeTrackingModifier.cpp:18)
==26967== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26967== Open file descriptor 9:
==26967==    at 0x117CE96B: eventfd (syscall-template.S:120)
==26967==    by 0x165F7188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F5395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F5704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F59F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x1655C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x1655C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x16466120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x1200C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1201149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x120122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1200918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12043627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12C23446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26967==    by 0xF0892D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26967==    by 0xF089327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26967==    by 0x40F7F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26967==    by 0x40EF7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26967==    by 0x40F35CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26967==    by 0x40F3461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26967==    by 0x40F3B5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26967==    by 0x40EDBF8: main (TestVolumeTrackingModifier.cpp:18)
==26967== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26967== Open file descriptor 8:
==26967==    at 0x117BF2BB: pipe2 (syscall-template.S:120)
==26967==    by 0x165F6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x1655C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x1655C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x16466120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x1200C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1201149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x120122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1200918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12043627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12C23446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26967==    by 0xF0892D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26967==    by 0xF089327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26967==    by 0x40F7F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26967==    by 0x40EF7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26967==    by 0x40F35CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26967==    by 0x40F3461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26967==    by 0x40F3B5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26967==    by 0x40EDBF8: main (TestVolumeTrackingModifier.cpp:18)
==26967== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26967== Open file descriptor 7:
==26967==    at 0x117BF2BB: pipe2 (syscall-template.S:120)
==26967==    by 0x165F6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x1655C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x1655C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x16466120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x1200C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1201149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x120122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1200918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12043627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12C23446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26967==    by 0xF0892D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26967==    by 0xF089327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26967==    by 0x40F7F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26967==    by 0x40EF7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26967==    by 0x40F35CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26967==    by 0x40F3461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26967==    by 0x40F3B5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26967==    by 0x40EDBF8: main (TestVolumeTrackingModifier.cpp:18)
==26967== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26967== Open file descriptor 4:
==26967==    at 0x117CF46B: epoll_create1 (syscall-template.S:120)
==26967==    by 0x165F96FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x165F58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26967==    by 0x1655C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x1655C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x16466120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26967==    by 0x1200C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1201149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x120122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x1200918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12043627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26967==    by 0x12C23446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26967==    by 0xF0892D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26967==    by 0xF089327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26967==    by 0x40F7F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26967==    by 0x40EF7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26967==    by 0x40F35CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26967==    by 0x40F3461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26967==    by 0x40F3B5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26967==    by 0x40EDBF8: main (TestVolumeTrackingModifier.cpp:18)
==26967== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26967== 
==26967== HEAP SUMMARY:
==26967==     in use at exit: 126,406 bytes in 899 blocks
==26967==   total heap usage: 11,774,295 allocs, 11,773,396 frees, 1,954,026,406 bytes allocated
==26967== 
==26967== LEAK SUMMARY:
==26967==    definitely lost: 0 bytes in 0 blocks
==26967==    indirectly lost: 0 bytes in 0 blocks
==26967==      possibly lost: 0 bytes in 0 blocks
==26967==    still reachable: 11,997 bytes in 46 blocks
==26967==         suppressed: 114,409 bytes in 853 blocks
==26967== Reachable blocks (those to which a pointer was found) are not shown.
==26967== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==26967== 
==26967== For lists of detected and suppressed errors, rerun with: -s
==26967== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)