==14189== Memcheck, a memory error detector ==14189== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14189== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14189== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==14189== Parent PID: 13746 ==14189== ==14189== ==14189== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14189== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14189== at 0x14DEF536: __open_nocancel (open64_nocancel.c:39) ==14189== by 0x14D73BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14189== by 0x1A36189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A361A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A360C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A360F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A230159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x145A60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145A318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145DD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14189== by 0x144DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14189== by 0x144DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14189== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14189== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14189== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14189== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14189== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14189== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14189== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14189== Open file descriptor 9: ==14189== at 0x14DFD96B: eventfd (syscall-template.S:120) ==14189== by 0x1A3C1188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3BF395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3BF704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3BF9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3260D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A3261E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A230120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x145A60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145A318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145DD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14189== by 0x144DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14189== by 0x144DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14189== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14189== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14189== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14189== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14189== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14189== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14189== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14189== Open file descriptor 8: ==14189== at 0x14DEE2BB: pipe2 (syscall-template.S:120) ==14189== by 0x1A3C0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3C3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3C3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3BF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3260D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A3261E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A230120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x145A60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145A318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145DD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14189== by 0x144DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14189== by 0x144DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14189== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14189== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14189== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14189== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14189== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14189== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14189== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14189== Open file descriptor 7: ==14189== at 0x14DEE2BB: pipe2 (syscall-template.S:120) ==14189== by 0x1A3C0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3C3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3C3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3BF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3260D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A3261E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A230120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x145A60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145A318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145DD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14189== by 0x144DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14189== by 0x144DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14189== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14189== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14189== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14189== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14189== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14189== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14189== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14189== Open file descriptor 4: ==14189== at 0x14DFE46B: epoll_create1 (syscall-template.S:120) ==14189== by 0x1A3C36FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3BF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14189== by 0x1A3260D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A3261E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x1A230120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14189== by 0x145A60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145AC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145A318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x145DD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14189== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14189== by 0x144DE2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14189== by 0x144DE327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14189== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14189== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14189== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14189== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14189== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14189== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14189== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14189== ==14189== HEAP SUMMARY: ==14189== in use at exit: 126,431 bytes in 901 blocks ==14189== total heap usage: 1,799,660 allocs, 1,798,759 frees, 118,228,022 bytes allocated ==14189== ==14189== LEAK SUMMARY: ==14189== definitely lost: 0 bytes in 0 blocks ==14189== indirectly lost: 0 bytes in 0 blocks ==14189== possibly lost: 0 bytes in 0 blocks ==14189== still reachable: 11,957 bytes in 44 blocks ==14189== suppressed: 114,474 bytes in 857 blocks ==14189== Reachable blocks (those to which a pointer was found) are not shown. ==14189== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14189== ==14189== For lists of detected and suppressed errors, rerun with: -s ==14189== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)