==14183== Memcheck, a memory error detector ==14183== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14183== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14183== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==14183== Parent PID: 13734 ==14183== ==14183== ==14183== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14183== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14183== at 0x14D27536: __open_nocancel (open64_nocancel.c:39) ==14183== by 0x14CABBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14183== by 0x1A29989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A299A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A298C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A298F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A168159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x144DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x14515627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14183== by 0x144162D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14183== by 0x14416327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14183== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14183== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14183== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14183== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14183== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14183== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14183== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14183== Open file descriptor 9: ==14183== at 0x14D3596B: eventfd (syscall-template.S:120) ==14183== by 0x1A2F9188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2F7395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2F7704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2F79F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A25E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A25E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A168120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x144DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x14515627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14183== by 0x144162D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14183== by 0x14416327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14183== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14183== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14183== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14183== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14183== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14183== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14183== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14183== Open file descriptor 8: ==14183== at 0x14D262BB: pipe2 (syscall-template.S:120) ==14183== by 0x1A2F8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2FB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2FB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2F78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A25E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A25E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A168120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x144DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x14515627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14183== by 0x144162D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14183== by 0x14416327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14183== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14183== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14183== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14183== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14183== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14183== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14183== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14183== Open file descriptor 7: ==14183== at 0x14D262BB: pipe2 (syscall-template.S:120) ==14183== by 0x1A2F8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2FB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2FB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2F78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A25E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A25E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A168120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x144DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x14515627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14183== by 0x144162D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14183== by 0x14416327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14183== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14183== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14183== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14183== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14183== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14183== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14183== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14183== Open file descriptor 6: ==14183== at 0x14D3646B: epoll_create1 (syscall-template.S:120) ==14183== by 0x1A2FB6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A2F78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14183== by 0x1A25E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A25E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x1A168120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14183== by 0x144DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x144DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x14515627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14183== by 0x6B7C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14183== by 0x144162D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14183== by 0x14416327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14183== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14183== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14183== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14183== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14183== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14183== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14183== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14183== ==14183== HEAP SUMMARY: ==14183== in use at exit: 103,738 bytes in 625 blocks ==14183== total heap usage: 1,812,924 allocs, 1,812,299 frees, 116,831,355 bytes allocated ==14183== ==14183== LEAK SUMMARY: ==14183== definitely lost: 0 bytes in 0 blocks ==14183== indirectly lost: 0 bytes in 0 blocks ==14183== possibly lost: 0 bytes in 0 blocks ==14183== still reachable: 11,957 bytes in 44 blocks ==14183== suppressed: 91,781 bytes in 581 blocks ==14183== Reachable blocks (those to which a pointer was found) are not shown. ==14183== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14183== ==14183== For lists of detected and suppressed errors, rerun with: -s ==14183== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 34 from 34)